JSON

Genome sc|0000108

Name

“Danuiimicrobium aquiferis”

Database

NCBI Assembly

Accession

GCA_001804285.1

Genomics

Accession
NCBI Assembly:GCA_001804285.1
Type
Metagenome-Assembled Genome (MAG)
Estimated Quality Metrics
  • Completeness: 96.43%
  • Contamination: 2.35%
  • Quality: 84.68
Ribosomal and transfer RNA genes
  • 1 16S rRNA (up to 100.0%)
  • 1 23S rRNA (up to 100.0%)
  • tRNAs for 19 amino acids
Source
Other features
  • G+C Content: 44.4%
  • Coding Density: 90.57%
  • Codon Table: 11
  • N50: 95,362 bp
  • Contigs: 69
  • Largest Contig: 234,349 bp
  • Assembly Length: 3,020,120 bp
  • Ambiguous Assembly Fraction: 0.0061%
Submitter comments
Completeness and contamination estimated with CheckM v. 2.
Automated checks
Complete

Sample Metadata

Date
Collection Date: 2013-06-03
Location
Lat Lon: 39.5369 N 107.7828 W
Toponym
Geo Loc Name: USA: Rifle, CO
Environment
Isolation Source: Rifle well FP-101 under low O2 conditions; 1.2 micron filter; full assembly
Other
Not detected
Package
Ncbi Submission Package: Metagenome.environmental.1.0
Biosamplemodel: Metagenome or environmental
All retrieved samples
Metadata retrieved 3 months ago


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