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cognitis nomina
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Genomes
sc|0001341
JSON
Genome sc|0001341
Name
Endomicrobiellum cryptotermitis
Database
NCBI Assembly
Accession
GCA_031257835.1
Genomics
Accession
NCBI Assembly:
GCA_031257835.1
Type
Metagenome-Assembled Genome (MAG)
Estimated Quality Metrics
Completeness:
90.64%
Contamination:
0.0%
Quality:
90.64
Ribosomal and transfer RNA genes
0 16S rRNAs
0 23S rRNAs
tRNAs for 18 amino acids
Sequencing depth
91.0 ×
Source
BioSample: SAMN21241147
BioSample: SAMN19322064
Other features
G+C Content:
31.1%
Coding Density:
86.24%
Codon Table:
11
N50:
59,104 bp
Contigs:
28
Largest Contig:
153,342 bp
Assembly Length:
1,051,938 bp
Ambiguous Assembly Fraction:
0.0%
Automated checks
Complete
Sample Metadata
Date
Collection Date:
2017-05-31
Location
Lat Lon:
52.443245 N 13.287523 E
Toponym
Geo Loc Name:
Germany: BAM Federal Institute for Materials Research and Testing, Berlin
Environment
Sample Type:
metagenomic assembly
Isolation Source:
termite gut
Env Broad Scale:
terrestrial biome
Env Local Scale:
woodland biome
Env Medium:
tropical woodland biome
Other
Host:
Cryptotermes dudleyi
Package
Ncbi Submission Package:
MIMAG.host-associated.6.0
•
MIMS.me.host-associated.6.0
Biosamplemodel:
MIMAG.host-associated
• MIGS/MIMS/MIMARKS.host-associated
All retrieved samples
SAMN21241147
: MIMAG Metagenome-assembled Genome sample from Endomicrobium sp.
SAMN19322064
: Termite gut metagenome of Cryptotermes dudleyi from BAM Federal Institute for Materials Research and Testing, Berlin, Germany - Cd354
Metadata retrieved
4 months ago
© 2022-2024 The SeqCode Initiative
All information contributed to the SeqCode Registry is released under the terms of the
Creative Commons Attribution (CC BY) 4.0
license
Automated Estimates
×
This genome was automatically retrieved and processed using MiGA (The Microbial Genomes Atlas)
[1]
, and the estimate has not been overridden by the submitter.
Rodriguez-R et al, 2018, NAR.
DOI: 10.1093/nar/gky467
SAMN21241147
×
Keywords: GSC:MIxS;MIMAG:6.0
collection_date
2017-05-31
organism
Endomicrobium sp.
isolation-source
termite gut
env_broad_scale
terrestrial biome
metagenomic
1
derived-from
This BioSample is a metagenomic assembly obtained from the termite gut metagenome BioSample: SAMN19322064
sample_type
metagenomic assembly
environmental-sample
1
env_local_scale
woodland biome
metagenome-source
termite gut metagenome
isolate
Cd354_bin52
NCBI submission package
MIMAG.host-associated.6.0
host
Cryptotermes dudleyi
geo_loc_name
Germany: BAM Federal Institute for Materials Research and Testing, Berlin
host_body_habitat
gut
env_medium
tropical woodland biome
lat_lon
52.443245 N 13.287523 E
sample-type
metagenomic assembly
BioSampleModel
MIMAG.host-associated
ENA-FIRST-PUBLIC
2023-08-17
ENA-LAST-UPDATE
2023-08-17
SAMN19322064
×
Keywords: GSC:MIxS;MIMS:6.0
collection_date
2017-05-31
INSDC secondary accession
SRS9116939
organism
termite gut metagenome
isolation-source
termite gut
env_broad_scale
terrestrial biome
env_local_scale
woodland biome
isolate
Cd354
NCBI submission package
MIMS.me.host-associated.6.0
host
Cryptotermes dudleyi
geo_loc_name
Germany: BAM Federal Institute for Materials Research and Testing, Berlin
host_body_habitat
gut
env_medium
tropical woodland biome
lat_lon
52.443245 N 13.287523 E
BioSampleModel
MIGS/MIMS/MIMARKS.host-associated
ENA-FIRST-PUBLIC
2023-08-17
ENA-LAST-UPDATE
2023-08-17
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