JSON

Genome sc|0001476

Name

Electrothrix rattekaaiensis

Database

NCBI Assembly

Accession

GCA_032595675.1

Genomics

Accession
NCBI Assembly:GCA_032595675.1
Type
Enrichment Genome
Estimated Quality Metrics
  • Completeness: 96.19%
  • Contamination: 0.72%
  • Quality: 92.59
Ribosomal and transfer RNA genes
  • 1 16S rRNA (up to 100.0%)
  • 1 23S rRNA (up to 100.0%)
  • tRNAs for 20 amino acids
Sequencing depth
57.0 ×
Source
Other features
  • G+C Content: 48.35%
  • Coding Density: 87.17%
  • Codon Table: 11
  • N50: 2,691,434 bp
  • Contigs: 5
  • Largest Contig: 2,691,434 bp
  • Assembly Length: 4,477,327 bp
  • Ambiguous Assembly Fraction: 0.0%
Submitter comments
Hybrid assembly of Illumina and Nanopore reads, quality check by CheckM2
Automated checks
Complete

Sample Metadata

Date
Collection Date: 2022
Location
Lat Lon: 51.439 N 4.167 E
Toponym
Geo Loc Name: Netherlands: Rattekaai salt marsh
Environment
Sample Type: metagenomic assembly
Isolation Source: enrichment culture inoculated with sediment from salt marsh
Env Broad Scale: ENVO:03000034
Env Local Scale: ENVO:00000045
Env Medium: ENVO:00005795
Other
Depth: 0-15 cm
Package
Ncbi Submission Package: MIMAG.sediment.6.0
Biosamplemodel: MIMAG.sediment
All retrieved samples
Metadata retrieved 10 months ago


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