collection_date

2014

note

This BioSample is a metagenomic assembly obtained from the marine sediment metagenome BioSample: SAMN09011260

type-material

reference material of Candidatus Electrothrix gigas

INSDC secondary accession

SRS17512989

organism

Candidatus Electrothrix gigas

metagenomic

1

sample_type

metagenomic assembly

environmental-sample

1

metagenome-source

marine sediment metagenome

isolate

AU1_5

NCBI submission package

Microbe.1.0

geo_loc_name

Netherlands: Rattekaai Salt Marsh

lat_lon

51.2621 N 4.1011 E

isolation_source

marine sediment

BioSampleModel

Microbe, viral or environmental

ENA-FIRST-PUBLIC

2021-03-03

ENA-LAST-UPDATE

2024-06-23

collection_date

2014

isolate

missing

NCBI submission package

Metagenome.environmental.1.0

organism

marine sediment metagenome

geo_loc_name

Netherlands: Rattekaai Salt Marsh

lat_lon

51.2621 N 4.1011 E

sample_type

missing

isolation_source

marine sediment

BioSampleModel

Metagenome or environmental

ENA-FIRST-PUBLIC

2022-02-01

ENA-LAST-UPDATE

2022-02-01

Metadata as EBI XML

<EXPERIMENT_SET>
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  <TITLE>Genomic sequencing of Candidatus Electrothrix filament AU1</TITLE>
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  <DESIGN>
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Metadata as EBI XML

<EXPERIMENT_SET>
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  <EXPERIMENT_LINKS>
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Metadata as EBI XML

<EXPERIMENT_SET>
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  <EXPERIMENT_LINKS>
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Metadata as EBI XML

<EXPERIMENT_SET>
<EXPERIMENT accession="SRX20179811" alias="AU2b" center_name="SUB13204640" broker_name="NCBI">
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    <SUBMITTER_ID namespace="SUB13204640">AU2b</SUBMITTER_ID>
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  <TITLE>Genomic sequencing of Candidatus Electrothrix filament AU2</TITLE>
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  <EXPERIMENT_LINKS>
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Metadata as EBI XML

<EXPERIMENT_SET>
<EXPERIMENT accession="SRX20179813" alias="AU3a" center_name="SUB13204640" broker_name="NCBI">
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    <SUBMITTER_ID namespace="SUB13204640">AU3a</SUBMITTER_ID>
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Metadata as EBI XML

<EXPERIMENT_SET>
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Metadata as EBI XML

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Metadata as EBI XML

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Metadata as EBI XML

<EXPERIMENT_SET>
<EXPERIMENT accession="SRX20179817" alias="AU5a" center_name="SUB13204640" broker_name="NCBI">
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  <DESIGN>
    <DESIGN_DESCRIPTION>Metagenomic sequencing of single bacterial filament</DESIGN_DESCRIPTION>
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        <EXTERNAL_ID namespace="BioSample">SAMN09811632</EXTERNAL_ID>
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    <LIBRARY_DESCRIPTOR>
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    <EXPERIMENT_LINK>
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      <XREF_LINK>
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      </XREF_LINK>
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</EXPERIMENT>
</EXPERIMENT_SET>

Metadata as EBI XML

<EXPERIMENT_SET>
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    <PRIMARY_ID>SRX20179818</PRIMARY_ID>
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  </STUDY_REF>
  <DESIGN>
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        <EXTERNAL_ID namespace="BioSample">SAMN09811632</EXTERNAL_ID>
      </IDENTIFIERS>
    </SAMPLE_DESCRIPTOR>
    <LIBRARY_DESCRIPTOR>
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      <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY>
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      <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION>
      <LIBRARY_LAYOUT>
        <PAIRED/>
      </LIBRARY_LAYOUT>
    </LIBRARY_DESCRIPTOR>
  </DESIGN>
  <PLATFORM>
    <ILLUMINA>
      <INSTRUMENT_MODEL>Illumina MiSeq</INSTRUMENT_MODEL>
    </ILLUMINA>
  </PLATFORM>
  <EXPERIMENT_LINKS>
    <EXPERIMENT_LINK>
      <XREF_LINK>
        <DB>ENA-SAMPLE</DB>
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      </XREF_LINK>
    </EXPERIMENT_LINK>
    <EXPERIMENT_LINK>
      <XREF_LINK>
        <DB>ENA-SUBMISSION</DB>
        <ID>SRA1630868</ID>
      </XREF_LINK>
    </EXPERIMENT_LINK>
    <EXPERIMENT_LINK>
      <XREF_LINK>
        <DB>ENA-FASTQ-FILES</DB>
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      </XREF_LINK>
    </EXPERIMENT_LINK>
    <EXPERIMENT_LINK>
      <XREF_LINK>
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      </XREF_LINK>
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</EXPERIMENT>
</EXPERIMENT_SET>