Genome sc|0001517


Database

INSDC Nucleotide

Accession

BAABNI000000000.1

Genomics

Accession
INSDC Nucleotide:BAABNI000000000.1
Type
Metagenome-Assembled Genome (MAG)
Estimated Quality Metrics
  • Completeness: 99.53%
  • Contamination: 1.29%
  • Quality: 93.07
Ribosomal and transfer RNA genes
  • 0 16S rRNAs
  • 0 23S rRNAs
  • tRNAs for 16 amino acids
Sequencing depth
61.8 ×
Source
Other features
  • G+C Content: 52.3%
  • Coding Density: 91.21%
  • Codon Table: 11
  • N50: 262,903 bp
  • Contigs: 25
  • Largest Contig: 490,396 bp
  • Assembly Length: 3,461,300 bp
  • Ambiguous Assembly Fraction: 0.0061%
Submitter comments
Raw reads were filtered using the Kneaddata pipeline v0.7.7 (https://github.com/biobakery/kneaddata) where human contaminations and low-quality reads were filtered before constructing the initial assembly via metaSPAdes v3.13.0 with default parameters. The binning, bin refinement, bin reassembly, and initial bin taxonomy classification were then performed using the metaWRAP pipeline v1.3 with the quality threshold for the bins set at >50% completeness and <10% contamination rate. The taxonomy of the final bins was further assessed using GTDB-Tk v2.1.1 using the Genome Taxonomy Database release 214. MAGs were accessed for completeness and contamination using CheckM v1.2.2 
Automated checks
Complete

Last modified 27 days ago

Sample Metadata

BioSample entries
Date
Collection Date: 2022-08-31
Location
Lat Lon: 1° 12′ 60″ N, 103° 51′ 0.54″ E
View sampling location map
Toponym
Geo Loc Name: Singapore:St John's island • Singapore:St. John's Island
Environment
Isolation Source: seawater
Env Broad Scale: seawater biome
Env Local Scale: lagoon
Env Medium: surface seawater
Other
Depth: 1m
Package
Ncbi Submission Package: MIMAG.water.6.0 • Generic.1.0
Biosamplemodel: MIMAG.water • Generic
All retrieved samples

Metadata retrieved 27 days ago

Sequencing Experiments

Illumina HiSeq X paired end sequencing of SAMD00732050


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