JSON

Genome sc|0001537

Name

Electronema aureumTs

Database

NCBI Assembly

Accession

GCA_004284765.1

Genomics

Accession
NCBI Assembly:GCA_004284765.1
Type
Enrichment Genome
Estimated Quality Metrics
  • Completeness: 93.0%
  • Contamination: 1.59%
  • Quality: 85.05
Ribosomal and transfer RNA genes
  • 2 16S rRNAs (up to 100.0%)
  • 2 23S rRNAs (up to 100.0%)
  • tRNAs for 20 amino acids
Sequencing depth
111.0 ×
Source
Other features
  • G+C Content: 52.0%
  • Coding Density: 88.04%
  • Codon Table: 11
  • N50: 58,414 bp
  • Contigs: 73
  • Largest Contig: 231,366 bp
  • Assembly Length: 2,762,383 bp
  • Ambiguous Assembly Fraction: 0.0%
Submitter comments
Illumina sequencing (2x 300 bp) of DNA from 5 separate samples of a freshwater cable bacterium enrichment culture. A metagenome was assembled from the pooled libraries by IDBA v. 1.1.1, from which the E. aureum genome was extracted. Quality checks were by CheckM.
Automated checks
Complete
Last modified about 1 month ago

Sample Metadata

BioSample entries
Date
Collection Date: 2015-01-08
Location
Lat Lon: 56.164874 N 10.207888 E
Toponym
Geo Loc Name: Denmark: Vennelystparken
Environment
Sample Type: metagenomic assembly
Isolation Source: freshwater sediment
Other
Rel To Oxygen: aerobe
Package
Ncbi Submission Package: Microbe.1.0 • Metagenome.environmental.1.0
Biosamplemodel: Microbe, viral or environmental • Metagenome or environmental
All retrieved samples
Metadata retrieved about 1 month ago


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