Genome sc|0001554

Name

Not registered

Database

NCBI Assembly

Accession

GCA_016711405.1

Marked for deletion

This genome is currently not registered as the nomenclatural type or the reference genome of any names in the Registry, and it will be purged from the database soon unless it is linked to a name

Genomics

Accession

NCBI Assembly:GCA_016711405.1

Type

Metagenome-Assembled Genome (MAG)

Estimated Quality Metrics

Completeness: 92.95% (automated estimate: 95.3%)
Contamination: 4.09% (automated estimate: 5.7%)
Quality: 72.5 (automated estimate: 66.8)

Ribosomal and transfer RNA genes

3 16S rRNAs (up to 100.0%) (automated estimate: 3)
4 23S rRNAs (up to 100.0%) (automated estimate: 4)
tRNAs for 19 amino acids (automated estimate: 21)

Sequencing depth

11.0 ×

Source

Other features

G+C Content: 56.34% (automated estimate: 56.34%)
Coding Density: 83.81%
Codon Table: 11
N50: 74,181 bp
Contigs: 113
Largest Contig: 237,382 bp
Assembly Length: 5,674,443 bp
Ambiguous Assembly Fraction: 0.0%

Automated checks

Complete

Edit genome data

Last modified 3 months ago

Sample Metadata

BioSample entries

Date

Collection Date: 2018-08-29

Location

Lat Lon: 55° 14′ 59″ N, 9° 30′ 31″ E

View map of sampling locations

Toponym

Geo Loc Name: Denmark: Haderslev

Environment

Sample Type: metagenomic assembly

Isolation Source: activated sludge from Hade_18-Q3-R52-61 • activated sludge

Env Broad Scale: aquatic biome [ENVO:00002030]

Env Local Scale: Waste Water [ENVO:00002001]

Env Medium: Activated Sludge [ENVO:00002046]

Other

Depth: 1m

Package

Ncbi Submission Package: MIMAG.wastewater.6.0 • MIMS.me.wastewater.5.0

Biosamplemodel: MIMAG.wastewater • MIGS/MIMS/MIMARKS.wastewater

All retrieved samples

Metadata retrieved 3 months ago

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