Genome sc|0001561

Genomics

Accession

NCBI Assembly:GCA_016716525.1

Type

Metagenome-Assembled Genome (MAG)

Estimated Quality Metrics

• Completeness: 97.27%
• Contamination: 1.21%
• Quality: 91.22

Ribosomal and transfer RNA genes

• 2 16S rRNAs (up to 100.0%)
• 2 23S rRNAs (up to 100.0%)
• tRNAs for 19 amino acids

Sequencing depth

11.0 ×

Source

• BioSample: SAMN16426120
• BioSample: SAMN14825699

Other features

• G+C Content: 62.6%
• Coding Density: 90.59%
• Codon Table: 11
• N50: 692,154 bp
• Contigs: 10
• Largest Contig: 2,130,107 bp
• Assembly Length: 5,503,990 bp
• Ambiguous Assembly Fraction: 0.0%

Automated checks

Complete

Sample Metadata

Date

Collection Date: 2018-08-29

Location

Lat Lon: 57.577275 N 9.992971 E

Toponym

Geo Loc Name: Denmark: Hirtshals

Environment

Sample Type: metagenomic assembly

Isolation Source: activated sludge from Hirt_18-Q3-R61-65 • activated sludge

Env Broad Scale: aquatic biome [ENVO:00002030]

Env Local Scale: Waste Water [ENVO:00002001]

Env Medium: Activated Sludge [ENVO:00002046]

Other

Depth: 1m

Package

Ncbi Submission Package: MIMAG.wastewater.6.0 • MIMS.me.wastewater.5.0

Biosamplemodel: MIMAG.wastewater • MIGS/MIMS/MIMARKS.wastewater

All retrieved samples

• SAMN16426120: MIMAG Metagenome-assembled Genome sample from Chloroflexota bacterium
• SAMN14825699: MIMS Environmental/Metagenome sample from activated sludge metagenome

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Metadata retrieved 5 months ago