Metadata as EBI XML
<EXPERIMENT_SET>
<EXPERIMENT accession="SRX2474122" alias="10083403_SF05.dna" broker_name="NCBI">
<IDENTIFIERS>
<PRIMARY_ID>SRX2474122</PRIMARY_ID>
<SUBMITTER_ID namespace="SUB2149335">10083403_SF05.dna</SUBMITTER_ID>
</IDENTIFIERS>
<TITLE>WGS of metagenomic and metatranscriptomic sequencing of the human gut microbiome: Subject 10083403</TITLE>
<STUDY_REF accession="SRP096283">
<IDENTIFIERS>
<PRIMARY_ID>SRP096283</PRIMARY_ID>
<EXTERNAL_ID namespace="BioProject">PRJNA354235</EXTERNAL_ID>
</IDENTIFIERS>
</STUDY_REF>
<DESIGN>
<DESIGN_DESCRIPTION>Participants deposited each bowel movement into a plastic commode collection bowl, and then using a specially designed spoon attached to a collection tube cap, feces were scooped along with into a tube containing RNAlater (PMID24843156). At each time point, participants stored the specimen in the RNAlater fixative at ambient temperature until the specimen collected from the second bowel movement was produced. Each set of stool specimens were then placed in a special mailing kit and returned at ambient temperatures by overnight mail. Upon receipt, the collection tubes were immediately placed into -80 degrees C freezers. Nucleic acids were extracted as detailed in this publication PMID24843156.</DESIGN_DESCRIPTION>
<SAMPLE_DESCRIPTOR accession="SRS1905594">
<IDENTIFIERS>
<PRIMARY_ID>SRS1905594</PRIMARY_ID>
<EXTERNAL_ID namespace="BioSample">SAMN06164399</EXTERNAL_ID>
</IDENTIFIERS>
</SAMPLE_DESCRIPTOR>
<LIBRARY_DESCRIPTOR>
<LIBRARY_NAME>10083403_SF05.dna</LIBRARY_NAME>
<LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY>
<LIBRARY_SOURCE>METAGENOMIC</LIBRARY_SOURCE>
<LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION>
<LIBRARY_LAYOUT>
<SINGLE/>
</LIBRARY_LAYOUT>
</LIBRARY_DESCRIPTOR>
</DESIGN>
<PLATFORM>
<ILLUMINA>
<INSTRUMENT_MODEL>Illumina HiSeq 2000</INSTRUMENT_MODEL>
</ILLUMINA>
</PLATFORM>
<EXPERIMENT_LINKS>
<EXPERIMENT_LINK>
<XREF_LINK>
<DB>ENA-SAMPLE</DB>
<ID>SRS1905594</ID>
</XREF_LINK>
</EXPERIMENT_LINK>
<EXPERIMENT_LINK>
<XREF_LINK>
<DB>ENA-SUBMISSION</DB>
<ID>SRA524775</ID>
</XREF_LINK>
</EXPERIMENT_LINK>
<EXPERIMENT_LINK>
<XREF_LINK>
<DB>ENA-FASTQ-FILES</DB>
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</XREF_LINK>
</EXPERIMENT_LINK>
<EXPERIMENT_LINK>
<XREF_LINK>
<DB>ENA-SUBMITTED-FILES</DB>
<ID><![CDATA[https://www.ebi.ac.uk/ena/portal/api/filereport?accession=SRX2474122&result=read_run&fields=run_accession,submitted_ftp,submitted_md5,submitted_bytes,submitted_format]]></ID>
</XREF_LINK>
</EXPERIMENT_LINK>
</EXPERIMENT_LINKS>
</EXPERIMENT>
</EXPERIMENT_SET>
Metadata retrieved about 1 month ago