JSON

Genome sc|0001607

Name

Ruminococcus hominiciens

Database

NCBI Assembly

Accession

GCA_037465725.1

Genomics

Accession
NCBI Assembly:GCA_037465725.1
Type
Metagenome-Assembled Genome (MAG)
Estimated Quality Metrics
  • Completeness: 97.07%
  • Contamination: 0.0%
  • Quality: 97.07
Ribosomal and transfer RNA genes
  • 0 16S rRNAs
  • 0 23S rRNAs
  • tRNAs for 17 amino acids
Sequencing depth
97.1 ×
Source
Other features
  • G+C Content: 46.0%
  • Coding Density: 88.98%
  • Codon Table: 11
  • N50: 14,894 bp
  • Contigs: 233
  • Largest Contig: 48,066 bp
  • Assembly Length: 2,526,953 bp
  • Ambiguous Assembly Fraction: 0.0%
Automated checks
Complete

Sample Metadata

BioSample entries
Date
Collection Date: 2019-06-11 • 2012
Location
Lat Lon: 37.0902 N 95.7129 W
Toponym
Geo Loc Name: USA
Environment
Sample Type: metagenomic assembly
Isolation Source: feces
Env Broad Scale: ENVO:00009003
Env Local Scale: ENVO:2100002
Env Medium: ENVO:00002003
Other
Host: Homo sapiens
Package
Ncbi Package: MIMAG.6.0 • MIMS.me.human-gut.6.0
Additional Accessions
SRR6028624
All retrieved samples
Metadata retrieved 8 months ago


© 2022-2024 The SeqCode Initiative
  All information contributed to the SeqCode Registry is released under the terms of the Creative Commons Attribution (CC BY) 4.0 license