Genome sc|0001610


Database

NCBI Assembly

Accession

GCA_031458775.1

Genomics

Accession
NCBI Assembly:GCA_031458775.1
Type
Metagenome-Assembled Genome (MAG)
Estimated Quality Metrics
  • Completeness: 92.59%
  • Contamination: 2.04%
  • Quality: 82.39
Ribosomal and transfer RNA genes
  • 1 16S rRNA (up to 37.0%)
  • 0 23S rRNAs
  • tRNAs for 20 amino acids
Sequencing depth
100.0 ×
Source
Other features
  • G+C Content: 68.83%
  • Coding Density: 93.56%
  • Codon Table: 11
  • N50: 52,927 bp
  • Contigs: 137
  • Largest Contig: 196,893 bp
  • Assembly Length: 3,710,879 bp
  • Ambiguous Assembly Fraction: 0.0038%
Automated checks
Complete

Last modified about 1 month ago

Sample Metadata

BioSample entries
Date
Collection Date: 2017-09
Location
Lat Lon: 25.44 N 98.46 E
Toponym
Geo Loc Name: China: Tengchong county, Yunnan, JZ-4 • China: Tengchong, Yunnan
Environment
Sample Type: metagenomic assembly
Isolation Source: Hot spring sediment • JZ-4
Env Broad Scale: Hot spring
Env Local Scale: Hot spring sediment
Env Medium: Hot spring sediment
Other
Depth: Surface
Package
Ncbi Submission Package: MIMAG.sediment.6.0Metagenome.environmental.1.0
Biosamplemodel: MIMAG.sediment • Metagenome or environmental
All retrieved samples

Metadata retrieved about 1 month ago

Sequencing Experiments

JZ-4_201709_metagenomics


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