Genome sc|0001624

Genomics

Accession

NCBI Assembly:GCA_030520105.1

Type

Isolate Genome

Estimated Quality Metrics

• Completeness: 93.19%
• Contamination: 2.93%
• Quality: 78.54

Ribosomal and transfer RNA genes

• 1 16S rRNA (up to 100.0%)
• 1 23S rRNA (up to 100.0%)
• tRNAs for 20 amino acids

Sequencing depth

590.0 ×

Source

• SRA: SRX22705682
• SRA: SRX22705681

Other features

• G+C Content: 52.0%
• Coding Density: 91.45%
• Codon Table: 11
• N50: 3,952,382 bp
• Contigs: 2
• Largest Contig: 3,952,382 bp
• Assembly Length: 3,988,786 bp
• Ambiguous Assembly Fraction: 0.0%

Submitter comments

Genome was assembled to replicon level with Nanopore long-read and Illumina short-read sequencing, using  SPAdes v3.15.4 to construct a hybrid assembly. Genome quality estimates were done with both CheckM (92.59 % completeness, 0.65 % contamination) and CheckM2, with values reported here for CheckM2. The number of tRNAs were calculated with tRNAscan-SE v. 2.0.11 and rRNAs were identified with barrnap v. 0.9.

Automated checks

Complete

Sample Metadata

Date

Collection Date: 2016-07-02

Location

Lat Lon: 40.661472 N 119.366139 W

Toponym

Geo Loc Name: USA: Great Boiling Spring, Gerlach, NV

Environment

Isolation Source: hot spring sediment

Env Broad Scale: hot spring [ENVO:00000051]|

Env Local Scale: sediment [ENVO:00002007]

Env Medium: sediment [ENVO:00002007]

Other

Depth: 0

Temp: 85 C

Rel To Oxygen: microaerophilic

Package

Ncbi Submission Package: MIGS.ba.sediment.6.0

Biosamplemodel: MIGS/MIMS/MIMARKS.sediment

All retrieved samples

• SRS19697985: MIGS Cultured Bacterial/Archaeal sample from Candidatus Fervidibacter sacchari

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Metadata retrieved about 1 month ago