Genome sc|0001644

Genomics

Accession

NCBI Assembly:GCA_016703545.1

Type

Metagenome-Assembled Genome (MAG)

Estimated Quality Metrics

• Completeness: 93.56%
• Contamination: 0.99%
• Quality: 88.61

Ribosomal and transfer RNA genes

• 1 16S rRNA (up to 100.0%)
• 1 23S rRNA (up to 100.0%)
• tRNAs for 19 amino acids

Sequencing depth

10.0 ×

Source

• BioSample: SAMN16425598
• BioSample: SAMN14825672

Other features

• G+C Content: 69.25%
• Coding Density: 88.25%
• Codon Table: 11
• N50: 496,924 bp
• Contigs: 21
• Largest Contig: 871,834 bp
• Assembly Length: 3,490,229 bp
• Ambiguous Assembly Fraction: 0.0%

Automated checks

Complete

Sample Metadata

Date

Collection Date: 2018-08-30

Location

Lat Lon: 55.608613 N 12.450537 E

Toponym

Geo Loc Name: Denmark: Avedore

Environment

Sample Type: metagenomic assembly

Isolation Source: activated sludge from Aved_18-Q3-R54-62 • activated sludge

Env Broad Scale: aquatic biome [ENVO:00002030]

Env Local Scale: Waste Water [ENVO:00002001]

Env Medium: Activated Sludge [ENVO:00002046]

Other

Depth: 1m

Package

Ncbi Submission Package: MIMAG.wastewater.5.0 • MIMS.me.wastewater.5.0

Biosamplemodel: MIMAG.wastewater • MIGS/MIMS/MIMARKS.wastewater

All retrieved samples

• SAMN16425598: MIMAG Metagenome-assembled Genome sample from Thermoflexaceae bacterium
• SAMN14825672: MIMS Environmental/Metagenome sample from activated sludge metagenome

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Metadata retrieved 5 months ago