Genome sc|0001816


Database

NCBI Assembly

Accession

GCA_019056875.1

Genomics

Accession
NCBI Assembly:GCA_019056875.1
Type
Metagenome-Assembled Genome (MAG)
Estimated Quality Metrics
  • Completeness: 95.02%
  • Contamination: 2.41%
  • Quality: 82.97
Ribosomal and transfer RNA genes
  • 0 16S rRNAs
  • 0 23S rRNAs
  • tRNAs for 16 amino acids
Sequencing depth
95.0 ×
Source
Other features
  • G+C Content: 41.0%
  • Coding Density: 83.73%
  • Codon Table: 11
  • N50: 8,269 bp
  • Contigs: 536
  • Largest Contig: 34,298 bp
  • Assembly Length: 3,677,642 bp
  • Ambiguous Assembly Fraction: 0.0%
Submitter comments
 CheckM was then applied to calculate estimated completeness and contamination 
Automated checks
Complete

Last modified about 2 months ago

Sample Metadata

BioSample entries
Date
Collection Date: 2013
Location
Lat Lon: 18.05 S 47.03 E
Toponym
Geo Loc Name: Madagascar
Environment
Sample Type: metagenomic assembly
Isolation Source: fossilized bones from two species of extinct elephant birds
Env Broad Scale: terrestrial biome
Env Local Scale: fossil
Env Medium: bone
Other
Not detected
Package
Ncbi Submission Package: MIMAG.sediment.6.0MIMS.me.miscellaneous.6.0
Additional Accessions
DRR027576, DRR027577, DRR027578, DRR027579, DRR027580, DRR027581, DRR027589, DRR027590, DRR027591, DRR027592 in BioProject PRJDB3255
All retrieved samples

Metadata retrieved about 2 months ago

Sequencing Experiments

Illumina MiSeq paired end sequencing of SAMD00022952
Illumina MiSeq sequencing of SAMD00022952
Illumina MiSeq sequencing of SAMD00022952
Illumina MiSeq paired end sequencing of SAMD00022952
Illumina MiSeq paired end sequencing of SAMD00022953
Illumina MiSeq paired end sequencing of SAMD00022953
Illumina MiSeq sequencing of SAMD00022953
Illumina MiSeq sequencing of SAMD00022953
Illumina MiSeq paired end sequencing of SAMD00022953
Illumina MiSeq paired end sequencing of SAMD00022954
Illumina MiSeq paired end sequencing of SAMD00022954
Illumina MiSeq paired end sequencing of SAMD00022955
Illumina MiSeq paired end sequencing of SAMD00022955
Illumina MiSeq paired end sequencing of SAMD00022955
Illumina MiSeq sequencing of SAMD00022955
Illumina MiSeq sequencing of SAMD00022955
Illumina MiSeq paired end sequencing of SAMD00022955


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