JSON

Genome sc|0001816

Name

“Jordarchaeum madagascariense”

Database

NCBI Assembly

Accession

GCA_019056875.1

Genomics

Accession
NCBI Assembly:GCA_019056875.1
Type
Metagenome-Assembled Genome (MAG)
Estimated Quality Metrics
  • Completeness: 95.02%
  • Contamination: 2.41%
  • Quality: 82.97
Ribosomal and transfer RNA genes
  • 1 16S rRNA (up to 0.0%)
  • 1 23S rRNA (up to 0.0%)
  • tRNAs for 16 amino acids
Sequencing depth
95.0 ×
Source
See all sources
Other features
  • G+C Content: 41.0%
  • Coding Density: 83.73%
  • Codon Table: 11
  • N50: 8,269 bp
  • Contigs: 536
  • Largest Contig: 34,298 bp
  • Assembly Length: 3,677,642 bp
  • Ambiguous Assembly Fraction: 0.0%
Submitter comments
 CheckM was then applied to calculate estimated completeness and contamination 
Automated checks
Complete

Sample Metadata

Date
Collection Date: 2013
Location
Lat Lon: 18.05 S 47.03 E
Toponym
Geo Loc Name: Madagascar
Environment
Sample Type: metagenomic assembly
Isolation Source: fossilized bones from two species of extinct elephant birds
Env Broad Scale: terrestrial biome
Env Local Scale: fossil
Env Medium: bone
Other
Depth: not applicable
Package
Ncbi Submission Package: MIMAG.sediment.6.0 • MIMS.me.miscellaneous.6.0
Additional Accessions
DRR027576, DRR027577, DRR027578, DRR027579, DRR027580, DRR027581, DRR027589, DRR027590, DRR027591, DRR027592 in BioProject PRJDB3255
All retrieved samples
Metadata retrieved 22 days ago


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