Genome sc|0001905


Database

NCBI Assembly

Accession

GCA_038144425.1

Genomics

Accession
NCBI Assembly:GCA_038144425.1
Type
Metagenome-Assembled Genome (MAG)
Estimated Quality Metrics
  • Completeness: 91.02%
  • Contamination: 1.36%
  • Quality: 84.22
Ribosomal and transfer RNA genes
  • 2 16S rRNAs (up to 100.0%)
  • 2 23S rRNAs (up to 100.0%)
  • tRNAs for 21 amino acids
Source
Other features
  • G+C Content: 63.0%
  • Coding Density: 90.44%
  • Codon Table: 11
  • N50: 1,052,124 bp
  • Contigs: 10
  • Largest Contig: 1,098,669 bp
  • Assembly Length: 3,035,073 bp
  • Ambiguous Assembly Fraction: 0.0%
Submitter comments
Completeness and contamination were evaluated using CheckM v 1.1.3
Automated checks
Complete

Last modified about 1 month ago

Sample Metadata

BioSample entries
Date
Collection Date: 2020-08-31
Location
Lat Lon: 27.329583 S 153.087083 E
Toponym
Geo Loc Name: Australia:Brisbane
Environment
Sample Type: metagenomic assembly
Isolation Source: estuary
Env Broad Scale: estuarine biome
Env Local Scale: estuary • bay
Env Medium: estuarine water
Other
Depth: 0
Package
Ncbi Submission Package: MIMAG.water.6.0MIMS.me.water.6.0
Biosamplemodel: MIMAG.water • MIGS/MIMS/MIMARKS.water
All retrieved samples

Metadata retrieved about 1 month ago

Sequencing Experiments

Brisbane river estuary microbiome


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