Genome sc|0001906

Genomics

Accession

NCBI Assembly:GCA_038147395.1

Type

Metagenome-Assembled Genome (MAG)

Estimated Quality Metrics

• Completeness: 92.99%
• Contamination: 0.61%
• Quality: 89.94

Ribosomal and transfer RNA genes

• 1 16S rRNA (up to 100.0%)
• 1 23S rRNA (up to 100.0%)
• tRNAs for 20 amino acids

Source

• BioSample: SAMN37862086
• BioSample: SAMN37699808

Other features

• G+C Content: 47.5%
• Coding Density: 92.69%
• Codon Table: 11
• N50: 2,079,570 bp
• Contigs: 1
• Largest Contig: 2,079,570 bp
• Assembly Length: 2,079,570 bp
• Ambiguous Assembly Fraction: 0.0%

Submitter comments

Completeness and contamination were evaluated using CheckM v 1.1.3

Automated checks

Complete

Sample Metadata

Date

Collection Date: 2020-02-26

Location

Lat Lon: 27.445556 S 153.084444 E

Toponym

Geo Loc Name: Australia:Brisbane

Environment

Sample Type: metagenomic assembly

Isolation Source: estuary

Env Broad Scale: estuarine biome

Env Local Scale: estuary • brackish

Env Medium: estuarine water

Other

Depth: 0

Package

Ncbi Submission Package: MIMAG.water.6.0 • MIMS.me.water.6.0

Biosamplemodel: MIMAG.water • MIGS/MIMS/MIMARKS.water

All retrieved samples

• SAMN37862086: MIMAG Metagenome-assembled Genome sample from Betaproteobacteria bacterium
• SAMN37699808: BR1_February_replicate_01

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Metadata retrieved 5 months ago