Genome sc|0001913

Genomics

Accession

NCBI Assembly:GCA_040225955.1

Type

Metagenome-Assembled Genome (MAG)

Estimated Quality Metrics

• Completeness: 93.46%
• Contamination: 4.67%
• Quality: 70.11

Ribosomal and transfer RNA genes

• 1 16S rRNA (up to 26.53%)
• 0 23S rRNAs
• tRNAs for 16 amino acids

Source

• BioSample: SAMN17217421

Other features

• G+C Content: 33.96%
• Coding Density: 86.51%
• Codon Table: 11
• N50: 31,421 bp
• Contigs: 189
• Largest Contig: 103,451 bp
• Assembly Length: 2,635,050 bp
• Ambiguous Assembly Fraction: 0.0087%

Submitter comments

The genome of MAG AB3033_2 was recovered from a marine sediment metagenome originating from the Guaymas Basin. It consists of 189 contigs with a total length of 2,635,218 bp, an N50 of 31,421 bp, an L50 of 36 contigs and a longest contig of 103,451 bp. A CheckM analysis indicates a completeness score of 93.46% and a redundancy/contamination score of 4.67%, meeting the requirements of a high-quality genome according to the MiMAG guidelines (Bower et al., 2017). We predicted protein-coding, rRNA and tRNA genes using Prokka v1.14.6 (Seemann, 2014). The GC content of this genome is 33.96%, and it includes 2,631 protein-encoding genes, 1 partial 16S rRNA (398 nt) gene and 30 tRNA genes for 16 standard amino acids.

Automated checks

Complete

Sample Metadata

Date

Collection Date: 2009

Location

Lat Lon: 27.388 N 111.24560 W

Toponym

Geo Loc Name: Mexico: Guaymas Basin, Gulf of California

Environment

Isolation Source: deep marine sediment

Env Broad Scale: marine biome ENVO_00000447

Env Local Scale: hydrothermal vent ENVO:00000215

Env Medium: deep marine sediment ENVO:00002113

Other

Depth: 30-33 cm

Temp: 22ºC

Package

Ncbi Submission Package: MIMS.me.sediment.6.0

Biosamplemodel: MIGS/MIMS/MIMARKS.sediment

All retrieved samples

• SAMN17217421: MIMS Environmental/Metagenome sample from marine sediment metagenome

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Metadata retrieved 5 months ago