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Asgardarchaeum abyssiTs

Citation

Formal styling
Asgardarchaeum abyssiTs Tamarit et al., 2024
Effective publication
Tamarit et al., 2024
SeqCode status
Valid (SeqCode)
Register List
seqco.de/r:xmz83je1 (validated)
Canonical URL
https://seqco.de/i:44143

Nomenclature

Rank
Species
Syllabication
a.bys'si
Etymology
L. gen. n. abyssi, abyss of the Guaymas Basin.
Nomenclatural type
NCBI Assembly: GCA_040225955.1
Nomenclatural status
Validly published under the SeqCode

Taxonomy

Description
Asgardarchaeum abyssi has a genome size of about 2.64 Mbp with average GC% of 33.96%. Metagenomic analyses indicate this novel archaeal class has been primarily extracted from the Guaymas Basin sediment and other deep-sea sites within the Gulf of California. Asgardarchaeum 16S shares only 63-83% 16S similarity with previously described Asgardarchaeota classes.  A. abyssi is an acetogenic chemoheterotroph like other Asgardarchaeota, including Freyarchaeia and Sifarchaeia.
Classification
Archaea » Asgardarchaeota » Asgardarchaeia » Asgardarchaeales » Asgardarchaeaceae » Asgardarchaeum » Asgardarchaeum abyssiTs
Parent
Asgardarchaeum assigned in Tamarit et al., 2024

Genomics

Accession
NCBI Assembly:GCA_040225955.1
Type
Metagenome-Assembled Genome (MAG)
Estimated Quality Metrics
  • Completeness: 93.46%
  • Contamination: 4.67%
  • Quality: 70.11
Ribosomal and transfer RNA genes
  • 1 16S rRNA (up to 26.53%)
  • 0 23S rRNAs
  • tRNAs for 16 amino acids
Source
Other features
  • G+C Content: 33.96%
  • Coding Density: 86.51%
  • Codon Table: 11
  • N50: 31,421 bp
  • Contigs: 189
  • Largest Contig: 103,451 bp
  • Assembly Length: 2,635,050 bp
  • Ambiguous Assembly Fraction: 0.0087%
Submitter comments
The genome of MAG AB3033_2 was recovered from a marine sediment metagenome originating from the Guaymas Basin. It consists of 189 contigs with a total length of 2,635,218 bp, an N50 of 31,421 bp, an L50 of 36 contigs and a longest contig of 103,451 bp. A CheckM analysis indicates a completeness score of 93.46% and a redundancy/contamination score of 4.67%, meeting the requirements of a high-quality genome according to the MiMAG guidelines (Bower et al., 2017). We predicted protein-coding, rRNA and tRNA genes using Prokka v1.14.6 (Seemann, 2014). The GC content of this genome is 33.96%, and it includes 2,631 protein-encoding genes, 1 partial 16S rRNA (398 nt) gene and 30 tRNA genes for 16 standard amino acids.
Automated checks
Complete
See additional details
Last modified about 1 month ago

Metadata

Outside links and data sources
Search sequences
Local history
Registered by
Appler, Kathryn 8 months ago
Submitted by
Appler, Kathryn 6 months ago
Curators
Validated by
Rodriguez-R, Luis M 6 months ago
Date of priority
2024-06-21 06:08 PM (UTC)

Publications
1

Citation Title
Tamarit et al., 2024, Systematic and Applied Microbiology Description of Asgardarchaeum abyssi gen. nov. spec. nov., a novel species within the class Asgardarchaeia and phylum Asgardarchaeota in accordance with the SeqCode
Effective publication
Assigned this taxon


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