BioSample Accession(s)

SAMN06268703, SRS1971318

collection_date

2012-10-04

INSDC secondary accession

SRS1971318

NCBI submission package

Metagenome.environmental.1.0

organism

hot springs metagenome

geo_loc_name

USA:Washburn Spring, Yellowstone National Park, Wyoming

GOLD Ecosystem Classification

Environmental | Aquatic | Thermal springs | Hot (42-90C) | Acidic

lat_lon

44.376 N 110.69 W

isolation_source

hot spring sediment

BioSampleModel

Metagenome or environmental

ENA-FIRST-PUBLIC

2017-01-25

ENA-LAST-UPDATE

2022-10-21

Keywords: GSC:MIxS;MIMAG:6.0

BioSample Accession(s)

SAMN38845049, ERS20723280

collection_date

2012-10-04

organism

Candidatus Fervidibacterota bacterium

env_broad_scale

aquatic biome [ENVO:00002030]

metagenomic

1

derived-from

SRR5247122

note original full organism names with tax id

Candidatus Fervidibacterota bacterium 3300025546_9

environmental-sample

1

env_local_scale

spring [ENVO:00000027]

metagenome-source

hot springs metagenome

isolate

3300025546_9

NCBI submission package

MIMAG.6.0

geo_loc_name

USA: Washburn Spring, Yellowstone National Park, Wyoming

env_medium

alkaline water [ENVO:01000357]

lat_lon

44.376 N 110.69 W

isolation_source

Sulfidic spring water

sample-type

metagenomic assembly

BioSampleModel

MIMAG

ENA-FIRST-PUBLIC

2023-12-27

ENA-LAST-UPDATE

2024-07-26

Metadata as EBI XML

<EXPERIMENT_SET>
<EXPERIMENT accession="SRX2553558" alias="JGI-SRA-7197" broker_name="NCBI">
  <IDENTIFIERS>
    <PRIMARY_ID>SRX2553558</PRIMARY_ID>
    <EXTERNAL_ID namespace="JGI">JGI-SRA-7197</EXTERNAL_ID>
  </IDENTIFIERS>
  <TITLE>Washburn Spring WS Metagenome</TITLE>
  <STUDY_REF accession="SRP099286">
    <IDENTIFIERS>
      <PRIMARY_ID>SRP099286</PRIMARY_ID>
      <EXTERNAL_ID namespace="BioProject">PRJNA366315</EXTERNAL_ID>
    </IDENTIFIERS>
  </STUDY_REF>
  <DESIGN>
    <DESIGN_DESCRIPTION/>
    <SAMPLE_DESCRIPTOR accession="SRS1971318">
      <IDENTIFIERS>
        <PRIMARY_ID>SRS1971318</PRIMARY_ID>
        <EXTERNAL_ID namespace="BioSample">SAMN06268703</EXTERNAL_ID>
      </IDENTIFIERS>
    </SAMPLE_DESCRIPTOR>
    <LIBRARY_DESCRIPTOR>
      <LIBRARY_NAME>NXHW</LIBRARY_NAME>
      <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY>
      <LIBRARY_SOURCE>METAGENOMIC</LIBRARY_SOURCE>
      <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION>
      <LIBRARY_LAYOUT>
        <PAIRED/>
      </LIBRARY_LAYOUT>
      <LIBRARY_CONSTRUCTION_PROTOCOL>Regular (DNA)</LIBRARY_CONSTRUCTION_PROTOCOL>
    </LIBRARY_DESCRIPTOR>
  </DESIGN>
  <PLATFORM>
    <ILLUMINA>
      <INSTRUMENT_MODEL>Illumina HiSeq 2000</INSTRUMENT_MODEL>
    </ILLUMINA>
  </PLATFORM>
  <EXPERIMENT_LINKS>
    <EXPERIMENT_LINK>
      <XREF_LINK>
        <DB>ENA-SAMPLE</DB>
        <ID>SRS1971318</ID>
      </XREF_LINK>
    </EXPERIMENT_LINK>
    <EXPERIMENT_LINK>
      <XREF_LINK>
        <DB>ENA-SUBMISSION</DB>
        <ID>SRA537154</ID>
      </XREF_LINK>
    </EXPERIMENT_LINK>
    <EXPERIMENT_LINK>
      <XREF_LINK>
        <DB>ENA-FASTQ-FILES</DB>
        <ID><![CDATA[https://www.ebi.ac.uk/ena/portal/api/filereport?accession=SRX2553558&result=read_run&fields=run_accession,fastq_ftp,fastq_md5,fastq_bytes]]></ID>
      </XREF_LINK>
    </EXPERIMENT_LINK>
    <EXPERIMENT_LINK>
      <XREF_LINK>
        <DB>ENA-SUBMITTED-FILES</DB>
        <ID><![CDATA[https://www.ebi.ac.uk/ena/portal/api/filereport?accession=SRX2553558&result=read_run&fields=run_accession,submitted_ftp,submitted_md5,submitted_bytes,submitted_format]]></ID>
      </XREF_LINK>
    </EXPERIMENT_LINK>
  </EXPERIMENT_LINKS>
</EXPERIMENT>
</EXPERIMENT_SET>