JSON

Genome sc|0000267

Name

Caribbeanibacter nitroreducensTs

Database

NCBI Assembly

Accession

GCA_947581645.1

Genomics

Accession
NCBI Assembly:GCA_947581645.1
Type
Metagenome-Assembled Genome (MAG)
Estimated Quality Metrics
  • Completeness: 96.15%
  • Contamination: 4.4%
  • Quality: 74.15
Ribosomal and transfer RNA genes
  • 0 16S rRNAs
  • 0 23S rRNAs
  • tRNAs for 20 amino acids
Source
Other features
  • G+C Content: 71.68%
  • Coding Density: 91.09%
  • Codon Table: 11
  • N50: 23,271 bp
  • Contigs: 199
  • Largest Contig: 95,544 bp
  • Assembly Length: 2,956,959 bp
  • Ambiguous Assembly Fraction: 0.0%
Submitter comments
 Genome quality has been evaluated using checkM, 16S rRNA gene presence has been analysed with sortmerna and tRNAscan was used to identify tRNA 
Automated checks
Complete

Sample Metadata

Date
Collection Date: 2011-12-14
Location
Lat Lon: 17.951083 N 67.193167 W
Toponym
Geo Loc Name: Puerto Rico:Cabo Rojo, Puerto Rico
Environment
Isolation Source: Cabo Rojo, Puerto Rico
Gold Ecosystem Classification: Environmental | Aquatic | Marine | Coastal | Sediment
Other
Not detected
Package
Ncbi Submission Package: Metagenome.environmental.1.0
Biosamplemodel: Metagenome or environmental
All retrieved samples
Metadata retrieved 10 months ago


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