Genome sc|0000276

Genomics

Accession

INSDC Nucleotide:AP027131.1

Type

Metagenome-Assembled Genome (MAG)

Estimated Quality Metrics

• Completeness: 100.0%
• Contamination: 0.0%
• Quality: 100.0

Ribosomal and transfer RNA genes

• 1 16S rRNA (up to 100.0%)
• 1 23S rRNA (up to 100.0%)
• tRNAs for 20 amino acids

Sequencing depth

53.0 ×

Source

• BioSample: SAMD00511446

Other features

• G+C Content: 22.7%
• Coding Density: 91.72%
• Codon Table: 4
• N50: 662,108 bp
• Contigs: 1
• Largest Contig: 662,108 bp
• Assembly Length: 662,108 bp
• Ambiguous Assembly Fraction: 0.0%

Submitter comments

We used ONT reads to assemble the MAG (AP027131.1) into a circular contig, which has undergone long- and short-read-based polishing and some manual curation, followed by annotation using DFAST. Despite the somewhat lower scores indicated by the automatic estimation pipeline, we are confident in the completeness and integrity of the genome. 

Automated checks

Complete

Sample Metadata

Date

Collection Date: 2021-09-06

Location

Lat Lon: 35.62579081 N 139.74790018 E

Toponym

Geo Loc Name: Japan:Tokyo

Environment

Isolation Source: not applicable

Other

Host: not applicable

Package

Ncbi Submission Package: Invertebrate.1.0

Biosamplemodel: Invertebrate

All retrieved samples

• SAMD00511446: Armadillidium vulgare TUMSAT20210906

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Metadata retrieved 8 months ago