Hepatoplasma vulgare

Citation

Formal styling

Hepatoplasma vulgare Kawato et al., 2024

Effective publication

Kawato et al., 2024

SeqCode status

Valid (SeqCode)

Register List

seqco.de/r:zkcp7nm0 (validated)

Canonical URL

https://seqco.de/i:23840

Nomenclature

Rank

Species

Syllabication

vul.ga're

Etymology

L. neut. adj. vulgare, common

Nomenclatural type

INSDC Nucleotide: AP027131.1

Nomenclatural status

Validly published under the SeqCode

Taxonomy

Description

Symbiont of the common pill bug Armadillidium vulgare

Classification

Bacteria » Mycoplasmatota » Mollicutes » Mycoplasmatales » Hepatoplasmataceae » Hepatoplasma » Hepatoplasma vulgare

Parent

Hepatoplasma gtdb

Genomics

Accession

INSDC Nucleotide:AP027131.1

Type

Metagenome-Assembled Genome (MAG)

Estimated Quality Metrics

• Completeness: 100.0%
• Contamination: 0.0%
• Quality: 100.0

Ribosomal and transfer RNA genes

• 1 16S rRNA (up to 100.0%)
• 1 23S rRNA (up to 100.0%)
• tRNAs for 20 amino acids

Sequencing depth

53.0 ×

Source

• BioSample: SAMD00511446

Other features

• G+C Content: 22.7%
• Coding Density: 91.72%
• Codon Table: 4
• N50: 662,108 bp
• Contigs: 1
• Largest Contig: 662,108 bp
• Assembly Length: 662,108 bp
• Ambiguous Assembly Fraction: 0.0%

Submitter comments

We used ONT reads to assemble the MAG (AP027131.1) into a circular contig, which has undergone long- and short-read-based polishing and some manual curation, followed by annotation using DFAST. Despite the somewhat lower scores indicated by the automatic estimation pipeline, we are confident in the completeness and integrity of the genome. 

Automated checks

Complete

See additional details

Metadata

Outside links and data sources

• GTDB Tree: s__Hepatoplasma vulgare
• Global Biodiversity Information Facility (GBIF)
• Wikispecies: Hepatoplasma vulgare (see reference source)

Search sequences

• Seach in NCBI Nucleotide

Local history

• This name was last modified 8 months ago
• Submission process status
• Quality checks before valid publication

Registered by

Kawato, Satoshi almost 2 years ago

Submitted by

Kawato, Satoshi 9 months ago

Curators

• Rodriguez-R, Luis M (genomics)
• Palmer, Marike (nomenclature)

Endorsed by

Palmer, Marike 8 months ago

Validated by

Palmer, Marike 8 months ago

Date of priority

2024-03-02 03:22 AM (UTC)