SeqCode Registry
cognitis nomina
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Genomes
sc|0003116
JSON
Genome sc|0003116
Name
Azosocius aquiferis
Database
NCBI Assembly
Accession
GCA_043390185.1
Genomics
Accession
NCBI Assembly:
GCA_043390185.1
Type
Metagenome-Assembled Genome (MAG)
Estimated Quality Metrics
Completeness:
100.0%
Contamination:
0.0%
Quality:
100.0
Ribosomal and transfer RNA genes
1 16S rRNA (up to 100.0%)
1 23S rRNA (up to 100.0%)
tRNAs for 20 amino acids
Sequencing depth
10.0 ×
Source
SRA: ERR3858113
SRA: ERR3858114
SRA: ERR3858115
Other features
G+C Content:
20.5%
Coding Density:
92.34%
Codon Table:
11
N50:
353,051 bp
Contigs:
1
Largest Contig:
353,051 bp
Assembly Length:
353,051 bp
Ambiguous Assembly Fraction:
0.0%
Submitter comments
Circular endosymbiont genome. Completeness and contamination based on the circularity, not marker gene content
Automated checks
Complete
Last modified
4 months ago
Sample Metadata
BioSample entries
BioSample: ERS4277059
BioSample: ERS4277060
BioSample: ERS4277061
Date
Collection Date:
2019-01-07
Location
Not detected
Toponym
Not detected
Environment
Not detected
Other
Not detected
Package
Ena Checklist:
ERC000011
All retrieved samples
ERS4277059
: Groundwater metagenome, well H51, replicate 1
ERS4277060
: Groundwater metagenome, well H51, replicate 2
ERS4277061
: Groundwater metagenome, well H51, replicate 3
Metadata retrieved
4 months ago
© 2022-2025 The SeqCode Initiative
All information contributed to the SeqCode Registry is released under the terms of the
Creative Commons Attribution (CC BY) 4.0
license
Automated Estimates
×
This genome was automatically retrieved and processed using MiGA (The Microbial Genomes Atlas)
[1]
, and the estimate has not been overridden by the submitter.
Rodriguez-R et al, 2018, NAR.
DOI: 10.1093/nar/gky467
ERS4277059
×
Metadata retrieved using the EBI API via ERR3858113 (linked through the EBI API)
BioSample Accession(s)
ERS4277059
ENA-CHECKLIST
ERC000011
collection_date
2019-01-07
ENA-FIRST-PUBLIC
2021-07-20
organism
groundwater metagenome
sequencing method
Illumina
ENA-LAST-UPDATE
2021-07-20
scientific_name
groundwater metagenome
ERS4277060
×
Metadata retrieved using the EBI API via ERR3858114 (linked through the EBI API)
BioSample Accession(s)
ERS4277060
ENA-CHECKLIST
ERC000011
collection_date
2019-01-07
ENA-FIRST-PUBLIC
2021-07-20
organism
groundwater metagenome
sequencing method
Illumina
ENA-LAST-UPDATE
2021-07-20
scientific_name
groundwater metagenome
ERS4277061
×
Metadata retrieved using the EBI API via ERR3858115 (linked through the EBI API)
BioSample Accession(s)
ERS4277061
ENA-CHECKLIST
ERC000011
collection_date
2019-01-07
ENA-FIRST-PUBLIC
2021-07-20
organism
groundwater metagenome
sequencing method
Illumina
ENA-LAST-UPDATE
2021-07-20
scientific_name
groundwater metagenome
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