JSON

Genome sc|0003159

Name

Tharpella aukensisTs

Database

NCBI Assembly

Accession

GCA_021163445.1

Genomics

Accession
NCBI Assembly:GCA_021163445.1
Type
Metagenome-Assembled Genome (MAG)
Estimated Quality Metrics
  • Completeness: 90.86%
  • Contamination: 0.29%
  • Quality: 89.41
Ribosomal and transfer RNA genes
  • 0 16S rRNAs
  • 1 23S rRNA (up to 30.0%)
  • tRNAs for 21 amino acids
Sequencing depth
19.0 ×
Source
Other features
  • G+C Content: 46.0%
  • Coding Density: 87.93%
  • Codon Table: 11
  • N50: 11,007 bp
  • Contigs: 363
  • Largest Contig: 38,684 bp
  • Assembly Length: 3,104,799 bp
  • Ambiguous Assembly Fraction: 0.0%
Submitter comments
quality metrics based on CheckM2, as run by the GTDB 
Automated checks
Complete
Last modified 4 months ago

Sample Metadata

BioSample entries
Date
Collection Date: 2015-04-18
Location
Lat Lon: 23° 57′ 25″ N, 108° 51′ 44″ W
View sampling location map
Toponym
Geo Loc Name: Pacific Ocean: Mexico, Pescadero Basin
Environment
Env Broad Scale: hydrothermal vent field
Env Local Scale: marine hydrothermal vent
Env Medium: marine sediment
Other
Depth: 7-14cm • 0-7cm
Package
Ncbi Submission Package: MIMS.me.sediment.5.0
Biosamplemodel: MIGS/MIMS/MIMARKS.sediment
All retrieved samples
Metadata retrieved 4 months ago


© 2022-2025 The SeqCode Initiative
  All information contributed to the SeqCode Registry is released under the terms of the Creative Commons Attribution (CC BY) 4.0 license