Genome sc|0003260

Genomics

Accession

NCBI Assembly:GCA_030587405.2

Type

Metagenome-Assembled Genome (MAG)

Estimated Quality Metrics

• Completeness: 91.59%
• Contamination: 4.67%
• Quality: 68.24

Ribosomal and transfer RNA genes

• 1 16S rRNA (up to 100.0%)
• 1 23S rRNA (up to 100.0%)
• tRNAs for 19 amino acids

Source

• BioSample: SAMN32689777
• BioSample: SAMN35617894

Other features

• G+C Content: 49.03%
• Coding Density: 81.51%
• Codon Table: 11
• N50: 44,174 bp
• Contigs: 131
• Largest Contig: 130,519 bp
• Assembly Length: 3,829,763 bp
• Ambiguous Assembly Fraction: 0.0%

Submitter comments

The genome quality is assessed by CheckM

Automated checks

Complete

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Last modified about 2 months ago

Sample Metadata

BioSample entries

• BioSample: SAMN32689777
• BioSample: SAMN35617894

Date

Collection Date: 2007-10

Location

Lat Lon: 27° 0′ 36″ N, 111° 24′ 36″ W

View sampling location map

Toponym

Geo Loc Name: Mexico: Guaymas Basin, Gulf of California

Environment

Sample Type: metagenomic assembly

Isolation Source: marine sediment

Env Broad Scale: marine

Env Local Scale: sediment

Env Medium: marine sediment

Other

Not detected

Package

Ncbi Submission Package: MIMAG.sediment.6.0 • Metagenome.environmental.1.0

Biosamplemodel: MIMAG.sediment • Metagenome or environmental

All retrieved samples

• SAMN32689777: MIMAG Metagenome-assembled Genome sample from Candidatus Freyrarchaeum guaymaensis
• SAMN35617894: Metagenome or environmental sample from marine sediment metagenome

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Metadata retrieved about 2 months ago