Keywords: GSC:MIxS;MIGS:6.0

BioSample Accession(s)

SAMN02232010, SRS656358

collection_date

Missing

isol_growth_condt

Missing

ref_biomaterial

PCC 7202, ATCC 29140

rel_to_oxygen

Missing

biotic_relationship

free living

project_name

Cyanobacterium stanieri PCC 7202

GOLD Stamp ID

Gi04164

feature

not provided; submitted under MIGS 2.1

Isolation Site

alkaline pod

collected-by

M. Lefevre

lat_lon

Missing

strain

PCC 7202

alt_elev

Missing

type-material

type strain of Cyanobacterium stanieri

INSDC secondary accession

SRS656358

Gram Staining

Gram-

organism

Cyanobacterium stanieri PCC 7202

isolation-source

alkaline pod

Diseases

None

environment

Missing

Isolation Comments

isolated by M Lefevre in 1963

NCBI submission package

MIGS.ba.6.0

depth

Missing

material

not provided; submitted under MIGS 2.1

biome

not provided; submitted under MIGS 2.1

num_replicons

1

Temperature Range

Mesophile

geo_loc_name

Chad

investigation_type

bacteria_archaea

trophic_level

Missing

env_package

missing

BioSampleModel

MIGS.ba

ENA-FIRST-PUBLIC

2013-07-12

ENA-LAST-UPDATE

2022-10-30

Metadata as EBI XML

<EXPERIMENT_SET>
<EXPERIMENT accession="SRX1952702" alias="JGI-SRA-19699" broker_name="NCBI">
  <IDENTIFIERS>
    <PRIMARY_ID>SRX1952702</PRIMARY_ID>
    <EXTERNAL_ID namespace="JGI">JGI-SRA-19699</EXTERNAL_ID>
  </IDENTIFIERS>
  <TITLE>Cyanobacterium stanieri PCC 7202</TITLE>
  <STUDY_REF accession="SRP017011">
    <IDENTIFIERS>
      <PRIMARY_ID>SRP017011</PRIMARY_ID>
      <EXTERNAL_ID namespace="BioProject">PRJNA39697</EXTERNAL_ID>
    </IDENTIFIERS>
  </STUDY_REF>
  <DESIGN>
    <DESIGN_DESCRIPTION/>
    <SAMPLE_DESCRIPTOR accession="SRS656358">
      <IDENTIFIERS>
        <PRIMARY_ID>SRS656358</PRIMARY_ID>
        <EXTERNAL_ID namespace="BioSample">SAMN02232010</EXTERNAL_ID>
      </IDENTIFIERS>
    </SAMPLE_DESCRIPTOR>
    <LIBRARY_DESCRIPTOR>
      <LIBRARY_NAME>GGFF</LIBRARY_NAME>
      <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY>
      <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE>
      <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION>
      <LIBRARY_LAYOUT>
        <SINGLE/>
      </LIBRARY_LAYOUT>
      <LIBRARY_CONSTRUCTION_PROTOCOL>Solexa paired ends</LIBRARY_CONSTRUCTION_PROTOCOL>
    </LIBRARY_DESCRIPTOR>
  </DESIGN>
  <PLATFORM>
    <ILLUMINA>
      <INSTRUMENT_MODEL>Illumina Genome Analyzer II</INSTRUMENT_MODEL>
    </ILLUMINA>
  </PLATFORM>
  <EXPERIMENT_LINKS>
    <EXPERIMENT_LINK>
      <XREF_LINK>
        <DB>ENA-SAMPLE</DB>
        <ID>SRS656358</ID>
      </XREF_LINK>
    </EXPERIMENT_LINK>
    <EXPERIMENT_LINK>
      <XREF_LINK>
        <DB>ENA-SUBMISSION</DB>
        <ID>SRA440969</ID>
      </XREF_LINK>
    </EXPERIMENT_LINK>
    <EXPERIMENT_LINK>
      <XREF_LINK>
        <DB>ENA-FASTQ-FILES</DB>
        <ID><![CDATA[https://www.ebi.ac.uk/ena/portal/api/filereport?accession=SRX1952702&result=read_run&fields=run_accession,fastq_ftp,fastq_md5,fastq_bytes]]></ID>
      </XREF_LINK>
    </EXPERIMENT_LINK>
    <EXPERIMENT_LINK>
      <XREF_LINK>
        <DB>ENA-SUBMITTED-FILES</DB>
        <ID><![CDATA[https://www.ebi.ac.uk/ena/portal/api/filereport?accession=SRX1952702&result=read_run&fields=run_accession,submitted_ftp,submitted_md5,submitted_bytes,submitted_format]]></ID>
      </XREF_LINK>
    </EXPERIMENT_LINK>
  </EXPERIMENT_LINKS>
</EXPERIMENT>
</EXPERIMENT_SET>

Metadata as EBI XML

<EXPERIMENT_SET>
<EXPERIMENT accession="SRX1952703" alias="JGI-SRA-19700" broker_name="NCBI">
  <IDENTIFIERS>
    <PRIMARY_ID>SRX1952703</PRIMARY_ID>
    <EXTERNAL_ID namespace="JGI">JGI-SRA-19700</EXTERNAL_ID>
  </IDENTIFIERS>
  <TITLE>Cyanobacterium stanieri PCC 7202</TITLE>
  <STUDY_REF accession="SRP017011">
    <IDENTIFIERS>
      <PRIMARY_ID>SRP017011</PRIMARY_ID>
      <EXTERNAL_ID namespace="BioProject">PRJNA39697</EXTERNAL_ID>
    </IDENTIFIERS>
  </STUDY_REF>
  <DESIGN>
    <DESIGN_DESCRIPTION/>
    <SAMPLE_DESCRIPTOR accession="SRS656358">
      <IDENTIFIERS>
        <PRIMARY_ID>SRS656358</PRIMARY_ID>
        <EXTERNAL_ID namespace="BioSample">SAMN02232010</EXTERNAL_ID>
      </IDENTIFIERS>
    </SAMPLE_DESCRIPTOR>
    <LIBRARY_DESCRIPTOR>
      <LIBRARY_NAME>GGFC</LIBRARY_NAME>
      <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY>
      <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE>
      <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION>
      <LIBRARY_LAYOUT>
        <SINGLE/>
      </LIBRARY_LAYOUT>
      <LIBRARY_CONSTRUCTION_PROTOCOL>Solexa paired ends</LIBRARY_CONSTRUCTION_PROTOCOL>
    </LIBRARY_DESCRIPTOR>
  </DESIGN>
  <PLATFORM>
    <ILLUMINA>
      <INSTRUMENT_MODEL>Illumina Genome Analyzer II</INSTRUMENT_MODEL>
    </ILLUMINA>
  </PLATFORM>
  <EXPERIMENT_LINKS>
    <EXPERIMENT_LINK>
      <XREF_LINK>
        <DB>ENA-SAMPLE</DB>
        <ID>SRS656358</ID>
      </XREF_LINK>
    </EXPERIMENT_LINK>
    <EXPERIMENT_LINK>
      <XREF_LINK>
        <DB>ENA-SUBMISSION</DB>
        <ID>SRA440969</ID>
      </XREF_LINK>
    </EXPERIMENT_LINK>
    <EXPERIMENT_LINK>
      <XREF_LINK>
        <DB>ENA-FASTQ-FILES</DB>
        <ID><![CDATA[https://www.ebi.ac.uk/ena/portal/api/filereport?accession=SRX1952703&result=read_run&fields=run_accession,fastq_ftp,fastq_md5,fastq_bytes]]></ID>
      </XREF_LINK>
    </EXPERIMENT_LINK>
    <EXPERIMENT_LINK>
      <XREF_LINK>
        <DB>ENA-SUBMITTED-FILES</DB>
        <ID><![CDATA[https://www.ebi.ac.uk/ena/portal/api/filereport?accession=SRX1952703&result=read_run&fields=run_accession,submitted_ftp,submitted_md5,submitted_bytes,submitted_format]]></ID>
      </XREF_LINK>
    </EXPERIMENT_LINK>
  </EXPERIMENT_LINKS>
</EXPERIMENT>
</EXPERIMENT_SET>

Metadata as EBI XML

<EXPERIMENT_SET>
<EXPERIMENT accession="SRX202489" alias="13745" center_name="JGI" broker_name="NCBI">
  <IDENTIFIERS>
    <PRIMARY_ID>SRX202489</PRIMARY_ID>
    <SUBMITTER_ID namespace="JGI">13745</SUBMITTER_ID>
  </IDENTIFIERS>
  <TITLE>Cyanobacterium stanieri PCC 7202 library</TITLE>
  <STUDY_REF accession="SRP017011" refname="13744">
    <IDENTIFIERS>
      <PRIMARY_ID>SRP017011</PRIMARY_ID>
      <SUBMITTER_ID namespace="JGI">13744</SUBMITTER_ID>
    </IDENTIFIERS>
  </STUDY_REF>
  <DESIGN>
    <DESIGN_DESCRIPTION>Solexa paired ends</DESIGN_DESCRIPTION>
    <SAMPLE_DESCRIPTOR accession="SRS656358">
      <IDENTIFIERS>
        <PRIMARY_ID>SRS656358</PRIMARY_ID>
        <EXTERNAL_ID namespace="BioSample">SAMN02232010</EXTERNAL_ID>
      </IDENTIFIERS>
    </SAMPLE_DESCRIPTOR>
    <LIBRARY_DESCRIPTOR>
      <LIBRARY_NAME>GGBC</LIBRARY_NAME>
      <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY>
      <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE>
      <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION>
      <LIBRARY_LAYOUT>
        <SINGLE/>
      </LIBRARY_LAYOUT>
    </LIBRARY_DESCRIPTOR>
    <SPOT_DESCRIPTOR>
      <SPOT_DECODE_SPEC>
        <SPOT_LENGTH>36</SPOT_LENGTH>
        <READ_SPEC>
          <READ_INDEX>0</READ_INDEX>
          <READ_CLASS>Application Read</READ_CLASS>
          <READ_TYPE>Forward</READ_TYPE>
          <BASE_COORD>1</BASE_COORD>
        </READ_SPEC>
      </SPOT_DECODE_SPEC>
    </SPOT_DESCRIPTOR>
  </DESIGN>
  <PLATFORM>
    <ILLUMINA>
      <INSTRUMENT_MODEL>Illumina Genome Analyzer II</INSTRUMENT_MODEL>
    </ILLUMINA>
  </PLATFORM>
  <PROCESSING/>
  <EXPERIMENT_LINKS>
    <EXPERIMENT_LINK>
      <XREF_LINK>
        <DB>ENA-SAMPLE</DB>
        <ID>SRS656358</ID>
      </XREF_LINK>
    </EXPERIMENT_LINK>
    <EXPERIMENT_LINK>
      <XREF_LINK>
        <DB>ENA-SUBMISSION</DB>
        <ID>SRA061123</ID>
      </XREF_LINK>
    </EXPERIMENT_LINK>
    <EXPERIMENT_LINK>
      <XREF_LINK>
        <DB>ENA-FASTQ-FILES</DB>
        <ID><![CDATA[https://www.ebi.ac.uk/ena/portal/api/filereport?accession=SRX202489&result=read_run&fields=run_accession,fastq_ftp,fastq_md5,fastq_bytes]]></ID>
      </XREF_LINK>
    </EXPERIMENT_LINK>
    <EXPERIMENT_LINK>
      <XREF_LINK>
        <DB>ENA-SUBMITTED-FILES</DB>
        <ID><![CDATA[https://www.ebi.ac.uk/ena/portal/api/filereport?accession=SRX202489&result=read_run&fields=run_accession,submitted_ftp,submitted_md5,submitted_bytes,submitted_format]]></ID>
      </XREF_LINK>
    </EXPERIMENT_LINK>
  </EXPERIMENT_LINKS>
</EXPERIMENT>
</EXPERIMENT_SET>