Keywords: GSC:MIxS;MIMAG:6.0

BioSample Accession(s)

SAMN33481878

collection_date

not available

experimental_factor

MELMC

metagenome_source

decomposition metagenome

organism

Sphingomonas sp.

environmental_sample

true

env_broad_scale

ENVO:00002261

metagenomic

true

env_local_scale

ENVO:00002261

derived from

This BioSample is a metagenomic assembly obtained from the decomposition metagenome BioSamples SAMN33438288-90

isolate

MAG 3606

NCBI submission package

MIMAG.6.0

geo_loc_name

Colombia:Gambita

env_medium

ENVO:00001998

lat_lon

5.931 N 73.304 W

isolation_source

decomposition metagenome

BioSampleModel

MIMAG

ENA-FIRST-PUBLIC

2023-03-11

ENA-LAST-UPDATE

2023-03-11

BioSample Accession(s)

SAMN33438288, SRS16887993

collection_date

not available

replicate

biological replicate 1

INSDC secondary accession

SRS16887993

NCBI submission package

Metagenome.environmental.1.0

organism

decomposition metagenome

geo_loc_name

Colombia:Gambita

lat_lon

5.931 N 73.304 W

isolation_source

soil

BioSampleModel

Metagenome or environmental

ENA-FIRST-PUBLIC

2023-02-24

ENA-LAST-UPDATE

2023-02-24

Metadata as EBI XML

<EXPERIMENT_SET>
<EXPERIMENT accession="SRX19498306" alias="61B-PacB" center_name="SUB12914622" broker_name="NCBI">
  <IDENTIFIERS>
    <PRIMARY_ID>SRX19498306</PRIMARY_ID>
    <SUBMITTER_ID namespace="SUB12914622">61B-PacB</SUBMITTER_ID>
  </IDENTIFIERS>
  <TITLE>Metagenome Seq of MELMC</TITLE>
  <STUDY_REF accession="SRP424467">
    <IDENTIFIERS>
      <PRIMARY_ID>SRP424467</PRIMARY_ID>
      <SUBMITTER_ID namespace="SUB12914622">bp0</SUBMITTER_ID>
    </IDENTIFIERS>
  </STUDY_REF>
  <DESIGN>
    <DESIGN_DESCRIPTION>A SMRTbell template library was prepared according to the instructions from PacificBiosciences, Menlo Park, CA, USA, following the Procedure &amp; Checklist  Preparing 10kb Library Using SMRTbell Express Template Prep Kit 2.0 for Metagenomics Shotgun Sequencing.</DESIGN_DESCRIPTION>
    <SAMPLE_DESCRIPTOR accession="SRS16887993">
      <IDENTIFIERS>
        <PRIMARY_ID>SRS16887993</PRIMARY_ID>
        <SUBMITTER_ID namespace="pda|boyke.bunk">MELMC-61B</SUBMITTER_ID>
      </IDENTIFIERS>
    </SAMPLE_DESCRIPTOR>
    <LIBRARY_DESCRIPTOR>
      <LIBRARY_NAME>61B-PacB</LIBRARY_NAME>
      <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY>
      <LIBRARY_SOURCE>METAGENOMIC</LIBRARY_SOURCE>
      <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION>
      <LIBRARY_LAYOUT>
        <SINGLE/>
      </LIBRARY_LAYOUT>
    </LIBRARY_DESCRIPTOR>
  </DESIGN>
  <PLATFORM>
    <PACBIO_SMRT>
      <INSTRUMENT_MODEL>Sequel II</INSTRUMENT_MODEL>
    </PACBIO_SMRT>
  </PLATFORM>
  <EXPERIMENT_LINKS>
    <EXPERIMENT_LINK>
      <XREF_LINK>
        <DB>ENA-SAMPLE</DB>
        <ID>SRS16887993</ID>
      </XREF_LINK>
    </EXPERIMENT_LINK>
    <EXPERIMENT_LINK>
      <XREF_LINK>
        <DB>ENA-SUBMISSION</DB>
        <ID>SRA1595685</ID>
      </XREF_LINK>
    </EXPERIMENT_LINK>
    <EXPERIMENT_LINK>
      <XREF_LINK>
        <DB>ENA-FASTQ-FILES</DB>
        <ID><![CDATA[https://www.ebi.ac.uk/ena/portal/api/filereport?accession=SRX19498306&result=read_run&fields=run_accession,fastq_ftp,fastq_md5,fastq_bytes]]></ID>
      </XREF_LINK>
    </EXPERIMENT_LINK>
    <EXPERIMENT_LINK>
      <XREF_LINK>
        <DB>ENA-SUBMITTED-FILES</DB>
        <ID><![CDATA[https://www.ebi.ac.uk/ena/portal/api/filereport?accession=SRX19498306&result=read_run&fields=run_accession,submitted_ftp,submitted_md5,submitted_bytes,submitted_format]]></ID>
      </XREF_LINK>
    </EXPERIMENT_LINK>
  </EXPERIMENT_LINKS>
</EXPERIMENT>
</EXPERIMENT_SET>