Genome sc|0003303


Database

INSDC Nucleotide

Accession

CP182343

Genomics

Accession
INSDC Nucleotide:CP182343
Type
Metagenome-Assembled Genome (MAG)
Estimated Quality Metrics
  • Completeness: 100.0%
  • Contamination: 2.8%
  • Quality: 86.0
Ribosomal and transfer RNA genes
  • 4 16S rRNAs (up to 100.0%)
  • 4 23S rRNAs (up to 100.0%)
  • tRNAs for 20 amino acids
Sequencing depth
349.7 ×
Source
Other features
  • G+C Content: 28.31%
  • Coding Density: 92.97%
  • Codon Table: 11
  • N50: 3,352,569 bp
  • Contigs: 1
  • Largest Contig: 3,352,569 bp
  • Assembly Length: 3,352,569 bp
  • Ambiguous Assembly Fraction: 0.0%
Automated checks
Complete

Last modified 4 months ago

Sample Metadata

BioSample entries
Date
Collection Date: 2008-06-06
Location
Lat Lon: 41° 38′ 30″ N, 70° 24′ 48″ W
View map of sampling locations
Toponym
Geo Loc Name: USA: MA, Marstons Mills, Prince Cove
Environment
Isolation Source: Lab-grown breviate-bacteria community • soft estuarine sediments
Other
Rel To Oxygen: microaerophilic
Package
Ncbi Submission Package: MIMAG.sediment.6.0
Biosamplemodel: MIMAG.sediment • Metagenome or environmental
All retrieved samples

Metadata retrieved 4 months ago

Sequencing Experiments

Raw metagenomic sequencing reads for Pygsuia


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