SeqCode Registry
cognitis nomina
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Genomes
sc|0003505
JSON
Genome sc|0003505
Name
“Ryujinia shimokita”
Database
INSDC Nucleotide
Accession
SAMD00885949
Genomics
Accession
INSDC Nucleotide:
SAMD00885949
Type
Metagenome-Assembled Genome (MAG)
Estimated Quality Metrics
Completeness:
96.99%
Contamination:
0.65%
Quality:
93.74
Ribosomal and transfer RNA genes
-1 16S rRNAs (up to 1557.0%)
1 23S rRNA (unknown length)
Source
BioSample: SAMD00885949
Other features
G+C Content:
41.66%
Automated checks
Failed: Cannot find ncbi:nuccore:SAMD00885949
Last modified
5 months ago
Sample Metadata
BioSample entries
BioSample: SAMD00885949
Date
Not detected
Location
Not detected
Toponym
Not detected
Environment
Analyte Type:
DNA
Other
Not detected
Package
Ncbi Package:
Generic.1.0
All retrieved samples
SAMD00885949
: Non-tumor DNA sample from BLOOD of a human female participant in the dbGaP study "GAW16 Framingham and Simulated Data"
Metadata retrieved
5 months ago
© 2022-2025 The SeqCode Initiative
All information contributed to the SeqCode Registry is released under the terms of the
Creative Commons Attribution (CC BY) 4.0
license
Automated Estimates
×
This genome was automatically retrieved and processed using MiGA (The Microbial Genomes Atlas)
[1]
, and the estimate has not been overridden by the submitter.
Rodriguez-R et al, 2018, NAR.
DOI: 10.1093/nar/gky467
SAMD00885949
×
Metadata retrieved using the NCBI API
BioSample Accession(s)
SAMD00885949, SAMN00885949,
gap_accession
phs000128
submitter_handle
Framingham_SHARe
biospecimen_repository
Framingham_SHARe
study_name
GAW16 Framingham and Simulated Data
study_design
Prospective Longitudinal Cohort
biospecimen_repository_sample_id
18330
submitted_sample_id
18330
submitted_subject_id
18330
gap_sample_id
105475
gap_subject_id
26678
sex
female
tissue
BLOOD
analyte_type
DNA
is_tumor
No
gap_consent_code
1
gap_consent_short_name
HMB-IRB-MDS
ncbi_package
Generic.1.0
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