Genome sc|0003507

Name

Agrobacterium bohemicum

Database

NCBI Assembly

Accession

GCF_002896715.1

Genomics

Accession

NCBI Assembly:GCF_002896715.1

Cultures

Strain sc|0039564

Type

Isolate Genome

Estimated Quality Metrics

Completeness: 97.2%
Contamination: -0.1%
Quality: 97.7

Ribosomal and transfer RNA genes

1 16S rRNA (up to 100.0%)
0 23S rRNAs
tRNAs for 20 amino acids

Sequencing depth

85.0 ×

Source

BioSample: SAMN07981493

Other features

G+C Content: 56.2%
Coding Density: 88.59%
Codon Table: 11
N50: 344,460 bp
Contigs: 30
Largest Contig: 835,148 bp
Assembly Length: 4,713,153 bp
Ambiguous Assembly Fraction: 0.16%

Submitter comments

Estimated contamination and completeness determined using CheckM, all other analyses performed on MiGA Gateway.

Automated checks

Complete

Last modified 2 months ago

Sample Metadata

BioSample entries

BioSample: SAMN07981493

Date

Collection Date: 2016-06-13

Location

Lat Lon: 50° 15′ 34″ N, 14° 29′ 7.6″ E

View map of sampling locations

Toponym

Geo Loc Name: Czech Republic:Nerartovice

Environment

Sample Type: Soil contaminated by poppy wastes

Isolation Source: soil contaminated by poppy wastes

Other

Depth: -15 cm

Temp: 17

Package

Ncbi Submission Package: Microbe.1.0

Biosamplemodel: Microbe, viral or environmental

All retrieved samples

SAMN07981493: Microbe sample from Agrobacterium bohemicum

Metadata retrieved 5 months ago

© 2022-2025 The SeqCode Initiative
All information contributed to the SeqCode Registry is released under the terms of the Creative Commons Attribution (CC BY) 4.0 license