BioSample Accession(s)

SAMN12120381, SRS5012811

strain

WH 5701

INSDC secondary accession

SRS5012811

NCBI submission package

Generic.1.0

organism

Synechococcus sp. WH 5701

BioSampleModel

Generic

ENA-FIRST-PUBLIC

2020-01-01

ENA-LAST-UPDATE

2023-07-21

Metadata as EBI XML

<EXPERIMENT_SET>
<EXPERIMENT accession="SRX6198772" alias="__JCVI000000WGGAG93320000588496E" center_name="JCVI" broker_name="NCBI">
  <IDENTIFIERS>
    <PRIMARY_ID>SRX6198772</PRIMARY_ID>
    <SUBMITTER_ID namespace="JCVI">__JCVI000000WGGAG93320000588496E</SUBMITTER_ID>
  </IDENTIFIERS>
  <TITLE>Trace experiment for center JCVI, GENOMIC, species SYNECHOCOCCUS SP. WH 5701  MOORE-FOUNDATION-SEQUENCING_M047-F-01-40KB</TITLE>
  <STUDY_REF accession="SRP210578">
    <IDENTIFIERS>
      <PRIMARY_ID>SRP210578</PRIMARY_ID>
      <EXTERNAL_ID namespace="JCVI">JCVI SYNECHOCOCCUS SP. WH 5701</EXTERNAL_ID>
    </IDENTIFIERS>
  </STUDY_REF>
  <DESIGN>
    <DESIGN_DESCRIPTION>N/A</DESIGN_DESCRIPTION>
    <SAMPLE_DESCRIPTOR accession="SRS5012811">
      <IDENTIFIERS>
        <PRIMARY_ID>SRS5012811</PRIMARY_ID>
        <SUBMITTER_ID namespace="JCVI">JCVI SYNECHOCOCCUS SP. WH 5701</SUBMITTER_ID>
      </IDENTIFIERS>
    </SAMPLE_DESCRIPTOR>
    <LIBRARY_DESCRIPTOR>
      <LIBRARY_NAME>MOORE-FOUNDATION-SEQUENCING_M047-F-01-40KB</LIBRARY_NAME>
      <LIBRARY_STRATEGY>WGA</LIBRARY_STRATEGY>
      <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE>
      <LIBRARY_SELECTION>unspecified</LIBRARY_SELECTION>
      <LIBRARY_LAYOUT>
        <SINGLE/>
      </LIBRARY_LAYOUT>
    </LIBRARY_DESCRIPTOR>
  </DESIGN>
  <PLATFORM>
    <CAPILLARY>
      <INSTRUMENT_MODEL>AB 310 Genetic Analyzer</INSTRUMENT_MODEL>
    </CAPILLARY>
  </PLATFORM>
  <EXPERIMENT_LINKS>
    <EXPERIMENT_LINK>
      <XREF_LINK>
        <DB>ENA-SAMPLE</DB>
        <ID>SRS5012811</ID>
      </XREF_LINK>
    </EXPERIMENT_LINK>
    <EXPERIMENT_LINK>
      <XREF_LINK>
        <DB>ENA-SUBMISSION</DB>
        <ID>SRA911229</ID>
      </XREF_LINK>
    </EXPERIMENT_LINK>
    <EXPERIMENT_LINK>
      <XREF_LINK>
        <DB>ENA-FASTQ-FILES</DB>
        <ID><![CDATA[https://www.ebi.ac.uk/ena/portal/api/filereport?accession=SRX6198772&result=read_run&fields=run_accession,fastq_ftp,fastq_md5,fastq_bytes]]></ID>
      </XREF_LINK>
    </EXPERIMENT_LINK>
    <EXPERIMENT_LINK>
      <XREF_LINK>
        <DB>ENA-SUBMITTED-FILES</DB>
        <ID><![CDATA[https://www.ebi.ac.uk/ena/portal/api/filereport?accession=SRX6198772&result=read_run&fields=run_accession,submitted_ftp,submitted_md5,submitted_bytes,submitted_format]]></ID>
      </XREF_LINK>
    </EXPERIMENT_LINK>
  </EXPERIMENT_LINKS>
</EXPERIMENT>
</EXPERIMENT_SET>

Metadata as EBI XML

<EXPERIMENT_SET>
<EXPERIMENT accession="SRX6198773" alias="__JCVI000000WGGAG93320000588497E" center_name="JCVI" broker_name="NCBI">
  <IDENTIFIERS>
    <PRIMARY_ID>SRX6198773</PRIMARY_ID>
    <SUBMITTER_ID namespace="JCVI">__JCVI000000WGGAG93320000588497E</SUBMITTER_ID>
  </IDENTIFIERS>
  <TITLE>Trace experiment for center JCVI, GENOMIC, species SYNECHOCOCCUS SP. WH 5701  MOORE-FOUNDATION-SEQUENCING_M047-G-01-4KB</TITLE>
  <STUDY_REF accession="SRP210578">
    <IDENTIFIERS>
      <PRIMARY_ID>SRP210578</PRIMARY_ID>
      <EXTERNAL_ID namespace="JCVI">JCVI SYNECHOCOCCUS SP. WH 5701</EXTERNAL_ID>
    </IDENTIFIERS>
  </STUDY_REF>
  <DESIGN>
    <DESIGN_DESCRIPTION>N/A</DESIGN_DESCRIPTION>
    <SAMPLE_DESCRIPTOR accession="SRS5012811">
      <IDENTIFIERS>
        <PRIMARY_ID>SRS5012811</PRIMARY_ID>
        <SUBMITTER_ID namespace="JCVI">JCVI SYNECHOCOCCUS SP. WH 5701</SUBMITTER_ID>
      </IDENTIFIERS>
    </SAMPLE_DESCRIPTOR>
    <LIBRARY_DESCRIPTOR>
      <LIBRARY_NAME>MOORE-FOUNDATION-SEQUENCING_M047-G-01-4KB</LIBRARY_NAME>
      <LIBRARY_STRATEGY>WGA</LIBRARY_STRATEGY>
      <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE>
      <LIBRARY_SELECTION>unspecified</LIBRARY_SELECTION>
      <LIBRARY_LAYOUT>
        <SINGLE/>
      </LIBRARY_LAYOUT>
    </LIBRARY_DESCRIPTOR>
  </DESIGN>
  <PLATFORM>
    <CAPILLARY>
      <INSTRUMENT_MODEL>AB 310 Genetic Analyzer</INSTRUMENT_MODEL>
    </CAPILLARY>
  </PLATFORM>
  <EXPERIMENT_LINKS>
    <EXPERIMENT_LINK>
      <XREF_LINK>
        <DB>ENA-SAMPLE</DB>
        <ID>SRS5012811</ID>
      </XREF_LINK>
    </EXPERIMENT_LINK>
    <EXPERIMENT_LINK>
      <XREF_LINK>
        <DB>ENA-SUBMISSION</DB>
        <ID>SRA911229</ID>
      </XREF_LINK>
    </EXPERIMENT_LINK>
    <EXPERIMENT_LINK>
      <XREF_LINK>
        <DB>ENA-FASTQ-FILES</DB>
        <ID><![CDATA[https://www.ebi.ac.uk/ena/portal/api/filereport?accession=SRX6198773&result=read_run&fields=run_accession,fastq_ftp,fastq_md5,fastq_bytes]]></ID>
      </XREF_LINK>
    </EXPERIMENT_LINK>
    <EXPERIMENT_LINK>
      <XREF_LINK>
        <DB>ENA-SUBMITTED-FILES</DB>
        <ID><![CDATA[https://www.ebi.ac.uk/ena/portal/api/filereport?accession=SRX6198773&result=read_run&fields=run_accession,submitted_ftp,submitted_md5,submitted_bytes,submitted_format]]></ID>
      </XREF_LINK>
    </EXPERIMENT_LINK>
  </EXPERIMENT_LINKS>
</EXPERIMENT>
</EXPERIMENT_SET>