BioSample Accession(s)

SAMN08179195, ERS22720330

altitude

363 m

organism

Methanobacteriota archaeon

collection date

2011-08-16

isolation source

permafrost active layer soil

geo loc name

Sweden: Stordalen Mire

metagenomic

1

environmental sample

1

metagenome source

peat metagenome

isolate

bog_38

NCBI submission package

Microbe.1.0

depth

0.2-0.23

lat lon

68.3533 N 19.0475 E

name

note

sample type

metagenomic assembly

value

This BioSample is a metagenomic assembly obtained from the 20110800_S2M metagenome BioSample: SAMN07124943.

BioSampleModel

Microbe, viral or environmental

ENA-FIRST-PUBLIC

2018-05-19

ENA-LAST-UPDATE

2024-10-02

Keywords: GSC:MIxS;MIMS:5.0

BioSample Accession(s)

SAMN07124943, SRS3288937

collection_date

2011-08-16

env_feature

active layer

INSDC secondary accession

SRS3288937

NCBI submission package

MIMS.me.soil.5.0

depth

0.2-0.23

env_material

soil

organism

peat metagenome

elev

363m

geo_loc_name

Sweden: Stordalen mire

core_name

20110800_S2

env_biome

permafrost

lat_lon

68.3533 N 19.0475 E

BioSampleModel

MIGS/MIMS/MIMARKS.soil

ENA-FIRST-PUBLIC

2018-05-11

ENA-LAST-UPDATE

2018-05-11

Metadata as EBI XML

<EXPERIMENT_SET>
<EXPERIMENT accession="SRX4071060" alias="20110800_S2M..NA" center_name="SUB3956636" broker_name="NCBI">
  <IDENTIFIERS>
    <PRIMARY_ID>SRX4071060</PRIMARY_ID>
    <SUBMITTER_ID namespace="SUB3956636">20110800_S2M..NA</SUBMITTER_ID>
  </IDENTIFIERS>
  <TITLE>metagenome of peat: 20110800_S2M</TITLE>
  <STUDY_REF accession="SRP145414">
    <IDENTIFIERS>
      <PRIMARY_ID>SRP145414</PRIMARY_ID>
      <EXTERNAL_ID namespace="BioProject">PRJNA386568</EXTERNAL_ID>
    </IDENTIFIERS>
  </STUDY_REF>
  <DESIGN>
    <DESIGN_DESCRIPTION>raw reads</DESIGN_DESCRIPTION>
    <SAMPLE_DESCRIPTOR accession="SRS3288937">
      <IDENTIFIERS>
        <PRIMARY_ID>SRS3288937</PRIMARY_ID>
        <EXTERNAL_ID namespace="BioSample">SAMN07124943</EXTERNAL_ID>
      </IDENTIFIERS>
    </SAMPLE_DESCRIPTOR>
    <LIBRARY_DESCRIPTOR>
      <LIBRARY_NAME>20110800_S2M..NA</LIBRARY_NAME>
      <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY>
      <LIBRARY_SOURCE>METAGENOMIC</LIBRARY_SOURCE>
      <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION>
      <LIBRARY_LAYOUT>
        <PAIRED/>
      </LIBRARY_LAYOUT>
    </LIBRARY_DESCRIPTOR>
  </DESIGN>
  <PLATFORM>
    <ILLUMINA>
      <INSTRUMENT_MODEL>Illumina HiSeq 2500</INSTRUMENT_MODEL>
    </ILLUMINA>
  </PLATFORM>
  <EXPERIMENT_LINKS>
    <EXPERIMENT_LINK>
      <XREF_LINK>
        <DB>ENA-SAMPLE</DB>
        <ID>SRS3288937</ID>
      </XREF_LINK>
    </EXPERIMENT_LINK>
    <EXPERIMENT_LINK>
      <XREF_LINK>
        <DB>ENA-SUBMISSION</DB>
        <ID>SRA702076</ID>
      </XREF_LINK>
    </EXPERIMENT_LINK>
    <EXPERIMENT_LINK>
      <XREF_LINK>
        <DB>ENA-FASTQ-FILES</DB>
        <ID><![CDATA[https://www.ebi.ac.uk/ena/portal/api/filereport?accession=SRX4071060&result=read_run&fields=run_accession,fastq_ftp,fastq_md5,fastq_bytes]]></ID>
      </XREF_LINK>
    </EXPERIMENT_LINK>
    <EXPERIMENT_LINK>
      <XREF_LINK>
        <DB>ENA-SUBMITTED-FILES</DB>
        <ID><![CDATA[https://www.ebi.ac.uk/ena/portal/api/filereport?accession=SRX4071060&result=read_run&fields=run_accession,submitted_ftp,submitted_md5,submitted_bytes,submitted_format]]></ID>
      </XREF_LINK>
    </EXPERIMENT_LINK>
  </EXPERIMENT_LINKS>
</EXPERIMENT>
</EXPERIMENT_SET>