JSON

Genome sc|0003610

Name

“Verrucolacustris abundans”

Database

NCBI Assembly

Accession

GCA_965194535.1

Genomics

Accession
NCBI Assembly:GCA_965194535.1
Cultures
Strain sc|0038970
Type
Isolate Genome
Estimated Quality Metrics
  • Completeness: 90.6%
  • Contamination: 0.84%
  • Quality: 86.4
Ribosomal and transfer RNA genes
  • 1 16S rRNA (up to 100.0%)
  • 1 23S rRNA (up to 100.0%)
  • tRNAs for 20 amino acids
Sequencing depth
750.7 ×
Source
Other features
  • G+C Content: 52.8%
  • Coding Density: 94.06%
  • Codon Table: 11
  • N50: 2,045,411 bp
  • Contigs: 1
  • Largest Contig: 2,045,411 bp
  • Assembly Length: 2,045,411 bp
  • Ambiguous Assembly Fraction: 0.0%
Submitter comments
Genome of a culture with very slow growth and low yield. DNA was amplified by MDA prior to sequencing. Sequencing was done with Illuminia Novaseq 6000, trimming of reads with BBMap v36.x, assembly with SPAdes v3.12.0. The genome was manually curated to a circular chromosome in Geneious 10 by repeated rounds of read mapping. Completeness and contamination were assessed with CheckM, but as the genome consists of a circular chromosome, it should be complete without any contamination.
Automated checks
Complete
Last modified about 2 months ago

Sample Metadata

BioSample entries
Date
Collection Date: 2019-10-15
Location
Geographic Location Latitude: 50° 39′ 13″ N
Geographic Location Longitude: 13° 56′ 40″ E
View map of sampling locations
Toponym
Geographic Location Country And Or Sea: Czechia
Environment
Broad Scale Environmental Context: aquatic
Local Environmental Context: Lake Milada - �st� nad Labem - Czech Republic
Environmental Medium: water
Other
Depth: 15
Package
Ena Checklist: ERC000024
All retrieved samples
Metadata retrieved about 2 months ago

Sequencing Experiments

Illumina NovaSeq 6000 paired end sequencing


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