JSON

Genome sc|0003623

Name

“Desulfocorpusculum asiaticum”

Database

INSDC Nucleotide

Accession

JBNGEK000000000.1

Genomics

Accession
INSDC Nucleotide:JBNGEK000000000.1
Type
Metagenome-Assembled Genome (MAG)
Estimated Quality Metrics
  • Completeness: 96.77%
  • Contamination: 0.64%
  • Quality: 93.55
Ribosomal and transfer RNA genes
  • 1 16S rRNA (up to 100.0%)
  • 1 23S rRNA (up to 27.0%)
  • tRNAs for 20 amino acids
Sequencing depth
106.0 ×
Source
Other features
  • G+C Content: 54.3%
  • Coding Density: 88.19%
  • Codon Table: 11
  • N50: 233,618 bp
  • Contigs: 52
  • Largest Contig: 641,648 bp
  • Assembly Length: 4,103,663 bp
  • Ambiguous Assembly Fraction: 0.0024%
Submitter comments
Completeness and contamination were assessed by CheckM (Parks et al., 2015).
Annotation of the genome was done by PGAP (Tatusova et al., 2016)
Automated checks
Complete
Last modified 14 days ago

Sample Metadata

BioSample entries
Date
Collection Date: 2022-10
Location
Lat Lon: 40° 9′ 44″ N, 66° 0′ 46″ E
View map of sampling locations
Toponym
Geo Loc Name: Uzbekistan: Navoiy Region
Environment
Isolation Source: sediment of a thermal stream
Other
Not detected
Package
Ncbi Submission Package: Metagenome.environmental.1.0
Biosamplemodel: Metagenome or environmental
All retrieved samples
Metadata retrieved 14 days ago

Sequencing Experiments

WGS shotgun metagenome of sediments of the hot water stream formed by discharge of artesian groundwater located in Navoiy Region, Uzbekistan


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