Keywords: GSC:MIxS;MIMAG:5.0

BioSample Accession(s)

SAMN30076288

collection_date

2020-12-23

organism

Candidatus Bathyarchaeota archaeon

env_broad_scale

mud volcano

metagenomic

1

environmental-sample

1

env_local_scale

terrestrial mud volcano "Golubitskoye Lake"

metagenome-source

mud metagenome

isolate

M17C-01

NCBI submission package

MIMAG.5.0

geo_loc_name

Russia: Taman Peninsula, Golubitskoye Lake

env_medium

mud

lat_lon

45.330145 N 37.263235 E

isolation_source

enrichment culture from mud volcano

sample-type

metagenomic assembly

sample derived-from

SAMN30120881

BioSampleModel

MIMAG

ENA-FIRST-PUBLIC

2022-08-01

ENA-LAST-UPDATE

2022-08-04

BioSample Accession(s)

SAMN30120881, SRS17195421

collection_date

2020-12-23

isolate

M17C

INSDC secondary accession

SRS17195421

NCBI submission package

Metagenome.environmental.1.0

organism

mud metagenome

geo_loc_name

Russia: Taman Peninsula, Golubitskoye Lake

lat_lon

45.330145 N 37.263235 E

isolation_source

mud vulcano

BioSampleModel

Metagenome or environmental

ENA-FIRST-PUBLIC

2022-08-03

ENA-LAST-UPDATE

2023-03-31

Metadata as EBI XML

<EXPERIMENT_SET>
<EXPERIMENT accession="SRX19836466" alias="M17C_S13" center_name="SUB13018165" broker_name="NCBI">
  <IDENTIFIERS>
    <PRIMARY_ID>SRX19836466</PRIMARY_ID>
    <SUBMITTER_ID namespace="SUB13018165">M17C_S13</SUBMITTER_ID>
  </IDENTIFIERS>
  <TITLE>shotgun metagenomic sequencing of M17C culture</TITLE>
  <STUDY_REF accession="SRP430310">
    <IDENTIFIERS>
      <PRIMARY_ID>SRP430310</PRIMARY_ID>
      <EXTERNAL_ID namespace="BioProject">PRJNA864620</EXTERNAL_ID>
    </IDENTIFIERS>
  </STUDY_REF>
  <DESIGN>
    <DESIGN_DESCRIPTION>KAPA HyperPlus</DESIGN_DESCRIPTION>
    <SAMPLE_DESCRIPTOR accession="SRS17195421">
      <IDENTIFIERS>
        <PRIMARY_ID>SRS17195421</PRIMARY_ID>
        <EXTERNAL_ID namespace="BioSample">SAMN30120881</EXTERNAL_ID>
      </IDENTIFIERS>
    </SAMPLE_DESCRIPTOR>
    <LIBRARY_DESCRIPTOR>
      <LIBRARY_NAME>M17C_S13</LIBRARY_NAME>
      <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY>
      <LIBRARY_SOURCE>METAGENOMIC</LIBRARY_SOURCE>
      <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION>
      <LIBRARY_LAYOUT>
        <PAIRED/>
      </LIBRARY_LAYOUT>
    </LIBRARY_DESCRIPTOR>
  </DESIGN>
  <PLATFORM>
    <ILLUMINA>
      <INSTRUMENT_MODEL>Illumina NovaSeq 6000</INSTRUMENT_MODEL>
    </ILLUMINA>
  </PLATFORM>
  <EXPERIMENT_LINKS>
    <EXPERIMENT_LINK>
      <XREF_LINK>
        <DB>ENA-SAMPLE</DB>
        <ID>SRS17195421</ID>
      </XREF_LINK>
    </EXPERIMENT_LINK>
    <EXPERIMENT_LINK>
      <XREF_LINK>
        <DB>ENA-SUBMISSION</DB>
        <ID>SRA1613944</ID>
      </XREF_LINK>
    </EXPERIMENT_LINK>
    <EXPERIMENT_LINK>
      <XREF_LINK>
        <DB>ENA-FASTQ-FILES</DB>
        <ID><![CDATA[https://www.ebi.ac.uk/ena/portal/api/filereport?accession=SRX19836466&result=read_run&fields=run_accession,fastq_ftp,fastq_md5,fastq_bytes]]></ID>
      </XREF_LINK>
    </EXPERIMENT_LINK>
    <EXPERIMENT_LINK>
      <XREF_LINK>
        <DB>ENA-SUBMITTED-FILES</DB>
        <ID><![CDATA[https://www.ebi.ac.uk/ena/portal/api/filereport?accession=SRX19836466&result=read_run&fields=run_accession,submitted_ftp,submitted_md5,submitted_bytes,submitted_format]]></ID>
      </XREF_LINK>
    </EXPERIMENT_LINK>
  </EXPERIMENT_LINKS>
</EXPERIMENT>
</EXPERIMENT_SET>