collection_date

2016-07

isolate

MAG AM3-C

NCBI submission package

Microbe.1.0

organism

Acidobacteriota bacterium

metagenomic

1

derived-from

This BioSample is a metagenomic assembly obtained from the marine sediment metagenome BioSample: SAMN15677121

geo_loc_name

Svalbard: Smeerenburgfjorden

lat_lon

79.713833 N 11.085000 E

environmental-sample

1

isolation_source

marine sediment; Station J, 5-10 cmbsf, microcosm with tetrathionate + molybdate

metagenome-source

marine sediment metagenome

sample-type

metagenomic assembly

BioSampleModel

Microbe, viral or environmental

ENA-FIRST-PUBLIC

2020-08-01

ENA-LAST-UPDATE

2023-02-14

collection_date

2016-07

INSDC secondary accession

SRS7120137

NCBI submission package

Metagenome.environmental.1.0

Sample_real_name

Smeerenburgfjorden; Station J, 5-10 cmbsf, microcosm with tetrathionate + molybdate

organism

marine sediment metagenome

geo_loc_name

Svalbard: Smeerenburgfjorden

lat_lon

79.713833 N 11.085000 E

isolation_source

marine sediment; Station J, 5-10 cmbsf, microcosm with tetrathionate + molybdate

BioSampleModel

Metagenome or environmental

ENA-FIRST-PUBLIC

2020-07-30

ENA-LAST-UPDATE

2021-02-28

Metadata as EBI XML

<EXPERIMENT_SET>
<EXPERIMENT accession="SRX8858076" alias="BSF_0307_HHJK7BBXX_2_StJ_TeM_S22733" center_name="SUB7856006" broker_name="NCBI">
  <IDENTIFIERS>
    <PRIMARY_ID>SRX8858076</PRIMARY_ID>
    <SUBMITTER_ID namespace="SUB7856006">BSF_0307_HHJK7BBXX_2_StJ_TeM_S22733</SUBMITTER_ID>
  </IDENTIFIERS>
  <TITLE>Smeerenburgfjorden_metagenome_Station_J_5-10_cmbsf,_microcosm_with_tetrathionate_+_molybdate</TITLE>
  <STUDY_REF accession="SRP255450">
    <IDENTIFIERS>
      <PRIMARY_ID>SRP255450</PRIMARY_ID>
      <EXTERNAL_ID namespace="BioProject">PRJNA623111</EXTERNAL_ID>
    </IDENTIFIERS>
  </STUDY_REF>
  <DESIGN>
    <DESIGN_DESCRIPTION>Shotgun metagenome5</DESIGN_DESCRIPTION>
    <SAMPLE_DESCRIPTOR accession="SRS7120137">
      <IDENTIFIERS>
        <PRIMARY_ID>SRS7120137</PRIMARY_ID>
        <EXTERNAL_ID namespace="BioSample">SAMN15677121</EXTERNAL_ID>
      </IDENTIFIERS>
    </SAMPLE_DESCRIPTOR>
    <LIBRARY_DESCRIPTOR>
      <LIBRARY_NAME>BSF_0307_HHJK7BBXX_2_StJ_TeM_S22733</LIBRARY_NAME>
      <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY>
      <LIBRARY_SOURCE>METAGENOMIC</LIBRARY_SOURCE>
      <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION>
      <LIBRARY_LAYOUT>
        <PAIRED/>
      </LIBRARY_LAYOUT>
    </LIBRARY_DESCRIPTOR>
  </DESIGN>
  <PLATFORM>
    <ILLUMINA>
      <INSTRUMENT_MODEL>Illumina HiSeq 3000</INSTRUMENT_MODEL>
    </ILLUMINA>
  </PLATFORM>
  <EXPERIMENT_LINKS>
    <EXPERIMENT_LINK>
      <XREF_LINK>
        <DB>ENA-SAMPLE</DB>
        <ID>SRS7120137</ID>
      </XREF_LINK>
    </EXPERIMENT_LINK>
    <EXPERIMENT_LINK>
      <XREF_LINK>
        <DB>ENA-SUBMISSION</DB>
        <ID>SRA1106101</ID>
      </XREF_LINK>
    </EXPERIMENT_LINK>
    <EXPERIMENT_LINK>
      <XREF_LINK>
        <DB>ENA-FASTQ-FILES</DB>
        <ID><![CDATA[https://www.ebi.ac.uk/ena/portal/api/filereport?accession=SRX8858076&result=read_run&fields=run_accession,fastq_ftp,fastq_md5,fastq_bytes]]></ID>
      </XREF_LINK>
    </EXPERIMENT_LINK>
    <EXPERIMENT_LINK>
      <XREF_LINK>
        <DB>ENA-SUBMITTED-FILES</DB>
        <ID><![CDATA[https://www.ebi.ac.uk/ena/portal/api/filereport?accession=SRX8858076&result=read_run&fields=run_accession,submitted_ftp,submitted_md5,submitted_bytes,submitted_format]]></ID>
      </XREF_LINK>
    </EXPERIMENT_LINK>
  </EXPERIMENT_LINKS>
</EXPERIMENT>
</EXPERIMENT_SET>