Genome sc|0000085


Database

NCBI Assembly

Accession

GCA_035161305.1

Genomics

Accession
NCBI Assembly:GCA_035161305.1
Type
Metagenome-Assembled Genome (MAG)
Estimated Quality Metrics
  • Completeness: 96.42%
  • Contamination: 0.03%
  • Quality: 96.27
Ribosomal and transfer RNA genes
  • 1 16S rRNA (up to 100.0%)
  • 1 23S rRNA (up to 100.0%)
  • tRNAs for 19 amino acids
Sequencing depth
22.43 ×
Source
Other features
  • G+C Content: 40.2%
  • Coding Density: 86.11%
  • Codon Table: 11
  • N50: 33,173 bp
  • Contigs: 78
  • Largest Contig: 150,908 bp
  • Assembly Length: 1,392,174 bp
  • Ambiguous Assembly Fraction: 0.0%
Submitter comments
Genome completeness and contamination were estimated using CheckM2. Ribosomal RNAs and tRNAs were identified via the Prokaryotic Genome Annotation Pipeline (PGAP). 
Automated checks
Complete

Last modified about 1 month ago

Sample Metadata

BioSample entries
Date
Collection Date: 2005-04-22
Location
Lat Lon: 22.1802 S 176.6008 W
Toponym
Geo Loc Name: Pacific Ocean: Lau Basin
Environment
Isolation Source: hydrothermal sulfide rock
Gold Ecosystem Classification: Environmental | Aquatic | Marine | Hydrothermal vents | Unclassified
Other
Not detected
Package
Ncbi Submission Package: Metagenome.environmental.1.0
Biosamplemodel: Metagenome or environmental
All retrieved samples

Metadata retrieved about 1 month ago

Sequencing Experiments

SRR7968105


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