Genome sc|0000956


Database

INSDC Nucleotide

Accession

JAVKGX000000000

Genomics

Accession
INSDC Nucleotide:JAVKGX000000000
Type
Metagenome-Assembled Genome (MAG)
Estimated Quality Metrics
  • Completeness: 93.52%
  • Contamination: 0.19%
  • Quality: 92.57
Ribosomal and transfer RNA genes
  • 1 16S rRNA (up to 100.0%)
  • 1 23S rRNA (up to 100.0%)
  • tRNAs for 20 amino acids
Sequencing depth
100.0 ×
Source
Other features
  • G+C Content: 69.04%
  • Coding Density: 92.9%
  • Codon Table: 11
  • N50: 198,011 bp
  • Contigs: 21
  • Largest Contig: 727,673 bp
  • Assembly Length: 2,192,732 bp
  • Ambiguous Assembly Fraction: 0.0%
Automated checks
Complete

Last modified about 1 month ago

Sample Metadata

BioSample entries
Date
Collection Date: 2018-08
Location
Lat Lon: 24.92 N 98.34 E
Toponym
Geo Loc Name: China: Tengchong county, Yunnan, BF3 • China: Tengchong, Yunnan
Environment
Sample Type: metagenomic assembly
Isolation Source: Hot spring sediment • BF3
Env Broad Scale: Hot spring
Env Local Scale: Hot spring sediment
Env Medium: Hot spring sediment
Other
Depth: Surface
Package
Ncbi Submission Package: MIMAG.sediment.6.0Metagenome.environmental.1.0
Biosamplemodel: MIMAG.sediment • Metagenome or environmental
All retrieved samples

Metadata retrieved about 1 month ago

Sequencing Experiments

BF3_201808_metagenomics


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