Genome sc|0000956

Genomics

Accession

INSDC Nucleotide:JAVKGX000000000

Type

Metagenome-Assembled Genome (MAG)

Estimated Quality Metrics

• Completeness: 93.52%
• Contamination: 0.19%
• Quality: 92.57

Ribosomal and transfer RNA genes

• 1 16S rRNA (up to 100.0%)
• 1 23S rRNA (up to 100.0%)
• tRNAs for 20 amino acids

Sequencing depth

100.0 ×

Source

• BioSample: SAMN35168702
• BioSample: SAMN35165513

Other features

• G+C Content: 69.04%
• Coding Density: 92.9%
• Codon Table: 11
• N50: 198,011 bp
• Contigs: 21
• Largest Contig: 727,673 bp
• Assembly Length: 2,192,732 bp
• Ambiguous Assembly Fraction: 0.0%

Automated checks

Complete

Sample Metadata

Date

Collection Date: 2018-08

Location

Lat Lon: 24.92 N 98.34 E

Toponym

Geo Loc Name: China: Tengchong county, Yunnan, BF3 • China: Tengchong, Yunnan

Environment

Sample Type: metagenomic assembly

Isolation Source: Hot spring sediment • BF3

Env Broad Scale: Hot spring

Env Local Scale: Hot spring sediment

Env Medium: Hot spring sediment

Other

Depth: Surface

Package

Ncbi Submission Package: MIMAG.sediment.6.0 • Metagenome.environmental.1.0

Biosamplemodel: MIMAG.sediment • Metagenome or environmental

All retrieved samples

• SAMN35168702: MIMAG Metagenome-assembled Genome sample from Armatimonadota bacterium
• SAMN35165513: Metagenome or environmental sample from hot springs metagenome

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Metadata retrieved about 2 months ago