Genome sc|0000957


Database

INSDC Nucleotide

Accession

JAVKHO000000000

Genomics

Accession
INSDC Nucleotide:JAVKHO000000000
Type
Metagenome-Assembled Genome (MAG)
Estimated Quality Metrics
  • Completeness: 94.44%
  • Contamination: 1.85%
  • Quality: 85.19
Ribosomal and transfer RNA genes
  • 1 16S rRNA (up to 100.0%)
  • 1 23S rRNA (up to 100.0%)
  • tRNAs for 21 amino acids
Sequencing depth
100.0 ×
Source
Other features
  • G+C Content: 70.95%
  • Coding Density: 94.43%
  • Codon Table: 11
  • N50: 115,275 bp
  • Contigs: 33
  • Largest Contig: 251,116 bp
  • Assembly Length: 2,595,127 bp
  • Ambiguous Assembly Fraction: 0.022%
Automated checks
Complete

Last modified about 1 month ago

Sample Metadata

BioSample entries
Date
Collection Date: 2018-03
Location
Lat Lon: 24.92 N 98.34 E
Toponym
Geo Loc Name: China: Tengchong county, Yunnan, HHBFW-2 • China: Tengchong, Yunnan
Environment
Sample Type: metagenomic assembly
Isolation Source: Hot spring sediment • HHBFW-2
Env Broad Scale: Hot spring
Env Local Scale: Hot spring sediment
Env Medium: Hot spring sediment
Other
Depth: Surface
Package
Ncbi Submission Package: MIMAG.sediment.6.0Metagenome.environmental.1.0
Biosamplemodel: MIMAG.sediment • Metagenome or environmental
All retrieved samples

Metadata retrieved about 1 month ago

Sequencing Experiments

HHBFW-2_201803_metagenomics


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