Genome sc|0000957

Genomics

Accession

INSDC Nucleotide:JAVKHO000000000

Type

Metagenome-Assembled Genome (MAG)

Estimated Quality Metrics

• Completeness: 94.44%
• Contamination: 1.85%
• Quality: 85.19

Ribosomal and transfer RNA genes

• 1 16S rRNA (up to 100.0%)
• 1 23S rRNA (up to 100.0%)
• tRNAs for 21 amino acids

Sequencing depth

100.0 ×

Source

• BioSample: SAMN35168719
• BioSample: SAMN35165523

Other features

• G+C Content: 70.95%
• Coding Density: 94.43%
• Codon Table: 11
• N50: 115,275 bp
• Contigs: 33
• Largest Contig: 251,116 bp
• Assembly Length: 2,595,127 bp
• Ambiguous Assembly Fraction: 0.022%

Automated checks

Complete

Sample Metadata

Date

Collection Date: 2018-03

Location

Lat Lon: 24.92 N 98.34 E

Toponym

Geo Loc Name: China: Tengchong county, Yunnan, HHBFW-2 • China: Tengchong, Yunnan

Environment

Sample Type: metagenomic assembly

Isolation Source: Hot spring sediment • HHBFW-2

Env Broad Scale: Hot spring

Env Local Scale: Hot spring sediment

Env Medium: Hot spring sediment

Other

Depth: Surface

Package

Ncbi Submission Package: MIMAG.sediment.6.0 • Metagenome.environmental.1.0

Biosamplemodel: MIMAG.sediment • Metagenome or environmental

All retrieved samples

• SAMN35168719: MIMAG Metagenome-assembled Genome sample from Armatimonadota bacterium
• SAMN35165523: Metagenome or environmental sample from hot springs metagenome

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Metadata retrieved about 2 months ago