collection_date

2014-09-03

isolate

NP_3

note

This BioSample is a metagenomic assembly obtained from the soil metagenome BioSample: SAMN08902864

NCBI submission package

Microbe.1.0

organism

Terrabacteria group bacterium ANGP1

metagenomic

1

geo_loc_name

USA: Angelo Coast Range Reserve, CA

lat_lon

39.74 N 123.63 W

sample_type

metagenomic assembly

environmental-sample

1

isolation_source

temperate grassland biome

metagenome-source

soil metagenome

BioSampleModel

Microbe, viral or environmental

ENA-FIRST-PUBLIC

2019-04-15

ENA-LAST-UPDATE

2019-05-14

Keywords: GSC:MIxS;MIMS:5.0

collection_date

2014-09-03

env_feature

meadow soil

INSDC secondary accession

SRS3199735

NCBI submission package

MIMS.me.soil.5.0

depth

10-20 cm

env_material

soil

organism

soil metagenome

elev

1417 ft

geo_loc_name

USA: Angelo Coast Range Reserve, CA

env_biome

temperate grassland biome

lat_lon

39.74 N 123.63 W

isolation_source

Plot 12

BioSampleModel

MIGS/MIMS/MIMARKS.soil

ENA-FIRST-PUBLIC

2018-06-12

ENA-LAST-UPDATE

2021-02-28

Metadata as EBI XML

<EXPERIMENT_SET>
<EXPERIMENT accession="SRX3974400" alias="14_0903_12_20cm" center_name="SUB3893762" broker_name="NCBI">
  <IDENTIFIERS>
    <PRIMARY_ID>SRX3974400</PRIMARY_ID>
    <SUBMITTER_ID namespace="SUB3893762">14_0903_12_20cm</SUBMITTER_ID>
  </IDENTIFIERS>
  <TITLE>Metagenomic sequencing of meadow soil: 10-20 cm</TITLE>
  <STUDY_REF accession="SRP141241">
    <IDENTIFIERS>
      <PRIMARY_ID>SRP141241</PRIMARY_ID>
      <EXTERNAL_ID namespace="BioProject">PRJNA449266</EXTERNAL_ID>
    </IDENTIFIERS>
  </STUDY_REF>
  <DESIGN>
    <DESIGN_DESCRIPTION>DNA was extracted using MoBio Laboratories PowerMax Soil DNA Isolation kits from 10 g of soil.</DESIGN_DESCRIPTION>
    <SAMPLE_DESCRIPTOR accession="SRS3199735">
      <IDENTIFIERS>
        <PRIMARY_ID>SRS3199735</PRIMARY_ID>
        <EXTERNAL_ID namespace="BioSample">SAMN08902864</EXTERNAL_ID>
      </IDENTIFIERS>
    </SAMPLE_DESCRIPTOR>
    <LIBRARY_DESCRIPTOR>
      <LIBRARY_NAME>14_0903_12_20cm</LIBRARY_NAME>
      <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY>
      <LIBRARY_SOURCE>METAGENOMIC</LIBRARY_SOURCE>
      <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION>
      <LIBRARY_LAYOUT>
        <PAIRED/>
      </LIBRARY_LAYOUT>
    </LIBRARY_DESCRIPTOR>
  </DESIGN>
  <PLATFORM>
    <ILLUMINA>
      <INSTRUMENT_MODEL>Illumina HiSeq 2500</INSTRUMENT_MODEL>
    </ILLUMINA>
  </PLATFORM>
  <EXPERIMENT_LINKS>
    <EXPERIMENT_LINK>
      <XREF_LINK>
        <DB>ENA-SAMPLE</DB>
        <ID>SRS3199735</ID>
      </XREF_LINK>
    </EXPERIMENT_LINK>
    <EXPERIMENT_LINK>
      <XREF_LINK>
        <DB>ENA-SUBMISSION</DB>
        <ID>SRA693115</ID>
      </XREF_LINK>
    </EXPERIMENT_LINK>
    <EXPERIMENT_LINK>
      <XREF_LINK>
        <DB>ENA-FASTQ-FILES</DB>
        <ID><![CDATA[https://www.ebi.ac.uk/ena/portal/api/filereport?accession=SRX3974400&result=read_run&fields=run_accession,fastq_ftp,fastq_md5,fastq_bytes]]></ID>
      </XREF_LINK>
    </EXPERIMENT_LINK>
    <EXPERIMENT_LINK>
      <XREF_LINK>
        <DB>ENA-SUBMITTED-FILES</DB>
        <ID><![CDATA[https://www.ebi.ac.uk/ena/portal/api/filereport?accession=SRX3974400&result=read_run&fields=run_accession,submitted_ftp,submitted_md5,submitted_bytes,submitted_format]]></ID>
      </XREF_LINK>
    </EXPERIMENT_LINK>
  </EXPERIMENT_LINKS>
</EXPERIMENT>
</EXPERIMENT_SET>