Danuiimicrobium aquiferisTs


Citation

Formal styling
Danuiimicrobium aquiferisTs Seymour et al., 2023 (valid 2024)
Effective publication
Seymour et al., 2023
SeqCode status
Valid (SeqCode)
Register List
seqco.de/r:xqyhj6of (validated)
Canonical URL
https://seqco.de/i:23683

Nomenclature

Rank
Species
Syllabication
a.qui.fe'ris
Etymology
N.L. gen. n. aquiferis, of an aquifer
Nomenclatural type
NCBI Assembly: GCA_001804285.1
Nomenclatural status
Validly published under the SeqCode

Taxonomy

Description
This species is the nomenclatural type of the genus Danuiimicrobium. This species can likely respire, as the genomes encode respiratory complexes I, III and V. Alternative terminal electron acceptors are predicted to be nitrate and nitric oxide, and a metal-reducing cytochrome is also encoded by genomes of this species. Cytoplasmic Group A3 [FeFe], Group 4f [NiFe] and membrane-bound Group 4g [NiFe] hydrogenases are encoded by genomes of this species. Additionally, a reversible acetyl-CoA synthetase is encoded by genomes of this species, which may indicate acetate utilization, and/or alternatively, may indicate simplified acetogenesis through the fermentation of glucose or other sugars to acetate, together with the Group A3 [FeFe] hydrogenase encoded by this species. All genes associated with the production of a Type-4a pilus are present in this species, and a "symbiotic" F-type ATPase, ADP/ATP translocase, and very large ORFs are encoded by genomes of this species. Genome assemblies for this species were recovered from soil and groundwater from Rifle, Colorado, USA, with measurements for samples being reported with an oxygen concentration of 0.29 mM and a pH of 7.28. The type for the species is the genome GCA_001804285.1.
Classification
Bacteria » Omnitrophota » Omnitrophia » Omnitrophales » Danuiimicrobiaceae » Danuiimicrobium » Danuiimicrobium aquiferisTs
Parent
Danuiimicrobium gtdb

Genomics

Accession
NCBI Assembly:GCA_001804285.1
Type
Metagenome-Assembled Genome (MAG)
Estimated Quality Metrics
  • Completeness: 96.43%
  • Contamination: 2.35%
  • Quality: 84.68
Ribosomal and transfer RNA genes
  • 1 16S rRNA (up to 100.0%)
  • 1 23S rRNA (up to 100.0%)
  • tRNAs for 19 amino acids
Source
Other features
  • G+C Content: 44.4%
  • Coding Density: 90.57%
  • Codon Table: 11
  • N50: 95,362 bp
  • Contigs: 69
  • Largest Contig: 234,349 bp
  • Assembly Length: 3,020,120 bp
  • Ambiguous Assembly Fraction: 0.0061%
Submitter comments
Completeness and contamination estimated with CheckM v. 2.
Automated checks
Complete
See additional details

Last modified 2 months ago

Metadata

Outside links and data sources
Search sequences
Local history
Registered by
Palmer, Marike, created over 2 years ago
Submitted by
Palmer, Marike 6 months ago
Curators
Validated by
Rodriguez-R, Luis M about 2 months ago
Date of priority
2024-07-12 07:11 PM (UTC)

Publications
1

Citation Title
Seymour et al., 2023, Nature Microbiology Hyperactive nanobacteria with host-dependent traits pervade Omnitrophota
Effective publication



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