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Ghiorseimicrobium undicolaTs

Citation

Formal styling
Ghiorseimicrobium undicolaTs Seymour et al., 2023 (valid 2024)
Effective publication
Seymour et al., 2023
SeqCode status
Valid (SeqCode)
Register List
seqco.de/r:xqyhj6of (validated)
Canonical URL
https://seqco.de/i:23759

Nomenclature

Rank
Species
Syllabication
un.di'co.la
Etymology
L. fem. n. unda, water; N.L. fem. suff. -cola, an inhabitant; N.L. fem. n. undicola, an inhabitant of water
Nomenclatural type
NCBI Assembly: GCA_002796125.1
Nomenclatural status
Validly published under the SeqCode

Taxonomy

Description
This species is the type for the genus Ghiorseimicrobium. Predicted genome size estimates are 1.9-2 Mb with a GC content of 41.89%. Genes for acetogenesis through the Wood-Ljungdahl pathway is present in this species, along with an Rnf complex. Additionally, a respiratory F-type ATPase for ATP synthesis is also encoded by this genome. Metal-reducing cytochromes and a conductive pilin is present in this species, along with very large ORFs, some genes for the tight-adherence complex, and all genes for the production of a Type-4a pilus. The assembly for the species originate from groundwater from Crystal Geyser, Utah, USA, where the temperature at the time of sampling was reported as 17.4 °C. The nomenclatural type for the species is the genome GCA_002796125.1.
Classification
Bacteria » Omnitrophota » “Velamenicoccia” » Ghiorseimicrobiales » Ghiorseimicrobiaceae » Ghiorseimicrobium » Ghiorseimicrobium undicolaTs
Parent
Ghiorseimicrobium gtdb

Genomics

Accession
NCBI Assembly:GCA_002796125.1
Type
Metagenome-Assembled Genome (MAG)
Estimated Quality Metrics
  • Completeness: 94.61%
  • Contamination: 0.75%
  • Quality: 90.86
Ribosomal and transfer RNA genes
  • 1 16S rRNA (up to 100.0%)
  • 1 23S rRNA (up to 66.0%)
  • tRNAs for 20 amino acids
Source
Other features
  • G+C Content: 41.89%
  • Coding Density: 92.66%
  • Codon Table: 11
  • N50: 51,778 bp
  • Contigs: 115
  • Largest Contig: 138,234 bp
  • Assembly Length: 1,825,353 bp
  • Ambiguous Assembly Fraction: 0.083%
Submitter comments
Completeness and contamination estimated with CheckM v. 2.
Automated checks
Complete
See additional details
Last modified about 1 month ago

Metadata

Outside links and data sources
Search sequences
Local history
Registered by
Palmer, Marike about 2 years ago
Submitted by
Palmer, Marike 5 months ago
Curators
Validated by
Rodriguez-R, Luis M 18 days ago
Date of priority
2024-07-12 07:11 PM (UTC)

Publications
1

Citation Title
Seymour et al., 2023, Nature Microbiology Hyperactive nanobacteria with host-dependent traits pervade Omnitrophota
Effective publication


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