Zapsychrus unditaenarius


Citation

Formal styling
Zapsychrus unditaenarius Seymour et al., 2023 (priority 2025)
Effective publication
Seymour et al., 2023
SeqCode status
Valid (SeqCode)
Register List
seqco.de/r:-x-tioq9 (validated)
Canonical URL
https://seqco.de/i:23775 Copy

Nomenclature

Rank
Species
Syllabication
un.di.tae.na.ri'us
Etymology
L. fem. n. unda, water; L. masc. adj. taenarius, below ground; N.L. masc. adj. unditaenarius, water from below ground
Nomenclatural type
NCBI Assembly: GCA_001805965.1
Nomenclatural status
Validly published under the SeqCode

Taxonomy

Description
This species conservatively belongs to the genus Zapsychrus. Low AAI values, typically associated with family-level relationships are observed between this taxon and the nomenclatural type for the genus, however, relative evolutionary divergence based on a phylogenomic tree inferred from the condensed Bac120 marker set indicate likely genus-level relationships. In addition to characteristics provided for the genus, predicted genome sizes range between 2.2-2.7 Mb with %GC between 37.12 and 37.60%. Some genes associated with acetogenesis and an Rnf complex are encoded by the genome. A reversible acetyl-CoA synthetase coupled with a cytoplasmic Group A3 [FeFe] hydrogenase encoded by this species may facilitate acetogenesis. A respiratory F-type ATPase, and a conductive pilin are encoded by genomes of this species. All genes associated with the tight-adherence complex formation and Type-4a pilus production are present in the genomes. Additionally, a "symbiotic" F-type ATPase and very large ORF are present in the genomes. Assemblies for this species originated from soil and groundwater samples from Rifle, Colorado, USA, where a pH of 7.67 was reported for some samples. The nomenclatural type for the species is the genome GCA_001805965.1.
Classification
Bacteria » Omnitrophota » Velaminicoccia » Zapsychrales » Zapsychraceae » Zapsychrus » Zapsychrus unditaenarius
Parent
Zapsychrus

Genomics

Accession
NCBI Assembly:GCA_001805965.1
Type
Metagenome-Assembled Genome (MAG)
Estimated Quality Metrics
  • Completeness: 92.63%
  • Contamination: 0.23%
  • Quality: 91.48
Ribosomal and transfer RNA genes
  • 1 16S rRNA (up to 100.0%)
  • 1 23S rRNA (up to 100.0%)
  • tRNAs for 20 amino acids
Sequencing depth
10.0 ×
Source
Other features
  • G+C Content: 37.47%
  • Coding Density: 92.35%
  • Codon Table: 11
  • N50: 55,792 bp
  • Contigs: 78
  • Largest Contig: 185,182 bp
  • Assembly Length: 2,677,152 bp
  • Ambiguous Assembly Fraction: 0.019%
Submitter comments
Completeness and contamination estimates calculated with CheckM v. 2.
Automated checks
Complete

Last modified 28 days ago

Metadata

Outside links and data sources
Search sequences
Local history
Registered by
Palmer, Marike, created over 2 years ago
Submitted by
Palmer, Marike 3 months ago
Curators
Validated by
St. John, Emily 28 days ago
Date of priority
2025-01-24 11:23 PM (UTC)

Publications
1

Citation Title
Seymour et al., 2023, Nature Microbiology Hyperactive nanobacteria with host-dependent traits pervade Omnitrophota
Effective publication



© 2022-2025 The SeqCode Initiative
  All information contributed to the SeqCode Registry is released under the terms of the Creative Commons Attribution (CC BY) 4.0 license