JSON

Genome sc|0000132

Name

“Zapsychrus unditaenarius”

Database

NCBI Assembly

Accession

GCA_001805965.1

Genomics

Accession
NCBI Assembly:GCA_001805965.1
Type
Metagenome-Assembled Genome (MAG)
Estimated Quality Metrics
  • Completeness: 92.63%
  • Contamination: 0.23%
  • Quality: 91.48
Ribosomal and transfer RNA genes
  • 1 16S rRNA (up to 100.0%)
  • 1 23S rRNA (up to 100.0%)
  • tRNAs for 20 amino acids
Source
Other features
  • G+C Content: 37.47%
  • Coding Density: 92.35%
  • Codon Table: 11
  • N50: 55,792 bp
  • Contigs: 78
  • Largest Contig: 185,182 bp
  • Assembly Length: 2,677,152 bp
  • Ambiguous Assembly Fraction: 0.019%
Submitter comments
Completeness and contamination estimates calculated with CheckM v. 2.
Automated checks
Complete
Last modified 11 months ago

Sample Metadata

BioSample entries
Date
Collection Date: 2012-08-02
Location
Lat Lon: 39.5369 N 107.7828 W
Toponym
Geo Loc Name: USA: Rifle, CO
Environment
Isolation Source: Rifle well CD01 at 16ft depth; 0.2 micron filter at time point A
Other
Not detected
Package
Ncbi Submission Package: Metagenome.environmental.1.0
Biosamplemodel: Metagenome or environmental
All retrieved samples
Metadata retrieved 2 months ago


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