Genome sc|0000132

Genomics

Accession

NCBI Assembly:GCA_001805965.1

Type

Metagenome-Assembled Genome (MAG)

Estimated Quality Metrics

• Completeness: 92.63%
• Contamination: 0.23%
• Quality: 91.48

Ribosomal and transfer RNA genes

• 1 16S rRNA (up to 100.0%)
• 1 23S rRNA (up to 100.0%)
• tRNAs for 20 amino acids

Sequencing depth

10.0 ×

Source

• SRA: SRX1085362

Other features

• G+C Content: 37.47%
• Coding Density: 92.35%
• Codon Table: 11
• N50: 55,792 bp
• Contigs: 78
• Largest Contig: 185,182 bp
• Assembly Length: 2,677,152 bp
• Ambiguous Assembly Fraction: 0.019%

Submitter comments

Completeness and contamination estimates calculated with CheckM v. 2.

Automated checks

Complete

---

Last modified 4 days ago

Sample Metadata

BioSample entries

• BioSample: SAMN03842443

Date

Collection Date: 2012-08-02

Location

Lat Lon: 39° 32′ 13″ N, 107° 46′ 58″ W

View sampling location map

Toponym

Geo Loc Name: USA: Rifle, CO

Environment

Isolation Source: Rifle well CD01 at 16ft depth; 0.2 micron filter at time point A

Other

Not detected

Package

Ncbi Submission Package: Metagenome.environmental.1.0

Biosamplemodel: Metagenome or environmental

All retrieved samples

• SAMN03842443: Metagenome or environmental sample from groundwater metagenome

---

Metadata retrieved 4 days ago