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Methanogranum gryphiswaldenseTs

Citation

Formal styling
Methanogranum gryphiswaldenseTs Protasov et al., 2023 (valid 2024)
Effective publication
Protasov et al., 2023
SeqCode status
Valid (SeqCode)
Register List
seqco.de/r:gyhq89gf (validated)
Cannonical URL
https://seqco.de/i:32536

Nomenclature

Rank
Species
Syllabication
gry.phis.wald.en'se
Etymology
N.L. neut. adj. gryphiswaldense, pertaining to Gryphiswald, the Latin name of the town Greifswald in Germany.
Nomenclatural type
NCBI Assembly: GCA_019262145
Nomenclatural status
Validly published under the SeqCode

Taxonomy

Description
The species identified by metagenomic analyses. The G+C content of the type genome is 43.7 mol%, and the genome size is 1.51 Mbp.
Classification
Archaea » Methanobacteriota » Thermoplasmata » Methanomassiliicoccales » Methanomethylophilaceae » Methanogranum » Methanogranum gryphiswaldenseTs
Parent
Methanogranum assigned in Weil et al., 2021

Genomics

Accession
NCBI Assembly:GCA_019262145
Type
Metagenome-Assembled Genome (MAG)
Estimated Quality Metrics
  • Completeness: 99.6%
  • Contamination: 0.0%
  • Quality: 99.6
Ribosomal and transfer RNA genes
  • 1 16S rRNA (up to 100.0%)
  • 1 23S rRNA (up to 100.0%)
  • tRNAs for 19 amino acids
Sequencing depth
300.0 ×
Source
Other features
  • G+C Content: 43.73%
  • Coding Density: 90.65%
  • Codon Table: 11
  • N50: 1,516,968 bp
  • Contigs: 1
  • Largest Contig: 1,516,968 bp
  • Assembly Length: 1,516,968 bp
  • Ambiguous Assembly Fraction: 0.0%
Submitter comments
CheckM and TRNAscan-SE 2.0 were used to assess genome quality and number of tRNAs. 
Automated checks
Complete
See additional details

Metadata

Outside links and data sources
Search sequences
Local history
Registered by
Protasov, Evgenii 10 months ago
Submitted by
Protasov, Evgenii 11 days ago
Curators
Endorsed by
Chuvochina, Maria 5 days ago
Validated by
Chuvochina, Maria 5 days ago
Date of priority
2024-06-17 08:09 AM (UTC)

Publications
2

Citation Title
Protasov et al., 2023, Frontiers in Microbiology Diversity and taxonomic revision of methanogens and other archaea in the intestinal tract of terrestrial arthropods
Effective publication
Weil et al., 2021, Microbiology Resource Announcements Full Genome Sequence of a Methanomassiliicoccales Representative Enriched from Peat Soil
Assigned this taxon


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  All information contributed to the SeqCode Registry is released under the terms of the Creative Commons Attribution (CC BY) 4.0 license