Methanorbis rubei

Citation

Formal styling

Methanorbis rubei Protasov et al., 2023 (valid 2024)

Effective publication

Protasov et al., 2023

SeqCode status

Valid (SeqCode)

Register List

seqco.de/r:hfttq0ec (validated)

Canonical URL

https://seqco.de/i:32573

Nomenclature

Rank

Species

Syllabication

ru'be.i

Etymology

L. gen. masc. n. rubei, of the red, referring to the color of the host.

Nomenclatural type

NCBI Assembly: GCA_032714495.1

Reference strain

Cs1 = DSM 115765

Nomenclatural status

Validly published under the SeqCode

Taxonomy

Description

Ovoid cocci cells 1–3 µm. Non-motile. H2 and CO2 are the substrates for methanogenesis; formate can substitute H2. Yeast extract stimulates growth. The optimum temperature is 33 °C.  The G+C content of the type genome is 50.2 mol%, and the genome size is 1.82 Mbp.

Classification

Archaea » Methanobacteriota » “Methanomicrobia” » Methanomicrobiales » Methanocorpusculaceae » Methanorbis » Methanorbis rubei

Parent

Methanorbis ncbi

Genomics

Accession

NCBI Assembly:GCA_032714495.1

Type

Isolate Genome

Estimated Quality Metrics

• Completeness: 98.3%
• Contamination: 1.3%
• Quality: 91.8

Ribosomal and transfer RNA genes

• 1 16S rRNA (up to 100.0%)
• 1 23S rRNA (up to 100.0%)
• tRNAs for 20 amino acids

Sequencing depth

253.0 ×

Source

• BioSample: SAMN35453645

Other features

• G+C Content: 50.2%
• Coding Density: 87.27%
• Codon Table: 11
• N50: 299,484 bp
• Contigs: 15
• Largest Contig: 371,544 bp
• Assembly Length: 1,829,609 bp
• Ambiguous Assembly Fraction: 0.0%

Automated checks

Complete

See additional details

Metadata

Outside links and data sources

• NCBI Taxonomy: 3028300
• GTDB Genome: GCA_032714495.1
• Global Biodiversity Information Facility (GBIF)
• Wikispecies: Methanorbis rubei (see reference source)

Search sequences

• Seach in NCBI Nucleotide
• NCBI Genomes table

Local history

• This name was last modified 5 months ago
• Submission process status
• Quality checks before valid publication

Registered by

Protasov, Evgenii about 1 year ago

Submitted by

Protasov, Evgenii 7 months ago

Curators

• Rodriguez-R, Luis M (genomics)
• Palmer, Marike (nomenclature)

Validated by

Rodriguez-R, Luis M 5 months ago

Date of priority

2024-04-16 06:48 PM (UTC)