Ruminimicrobium bovinumTs


Citation

Formal styling
Ruminimicrobium bovinumTs Mies et al., 2024
Effective publication
Mies et al., 2024
SeqCode status
Valid (SeqCode)
Register List
seqco.de/r:tm1bm3q2 (validated)
Canonical URL
https://seqco.de/i:32932

Nomenclature

Rank
Species
Syllabication
bo.vi'num
Etymology
L. neut. adj. bovinum, of or belonging to cattle, referring to the isolation source
Nomenclatural type
NCBI Assembly: GCA_900316875.1
Nomenclatural status
Validly published under the SeqCode

Taxonomy

Description
The species comprises only metagenome-assembled genomes. The species includes all bacteria with more than 95% average nucleotide identity (ANI) to the type genome. The GC content of the type genome is 31.0 mol% and the estimated genome size is 1.9 Mbp.
Classification
Bacteria » Elusimicrobiota » Endomicrobiia » Endomicrobiales » Endomicrobiaceae » Ruminimicrobium » Ruminimicrobium bovinumTs
Parent
Ruminimicrobium

Genomics

Accession
NCBI Assembly:GCA_900316875.1
Type
Metagenome-Assembled Genome (MAG)
Estimated Quality Metrics
  • Completeness: 99.53%
  • Contamination: 3.51%
  • Quality: 81.98
Ribosomal and transfer RNA genes
  • 1 16S rRNA (up to 17.0%)
  • 0 23S rRNAs
  • tRNAs for 18 amino acids
Sequencing depth
16.0 ×
Source
Other features
  • G+C Content: 31.0%
  • Coding Density: 92.33%
  • Codon Table: 11
  • N50: 8,979 bp
  • Contigs: 284
  • Largest Contig: 61,267 bp
  • Assembly Length: 1,888,169 bp
  • Ambiguous Assembly Fraction: 0.0%
Submitter comments
Contamination and completeness of this MAG were assessed with CheckM2.
Automated checks
Complete
See additional details

Metadata

Outside links and data sources
Search sequences
Local history
Registered by
Mies, Undine Sophie 11 months ago
Submitted by
Mies, Undine Sophie 4 months ago
Curators
Validated by
Rodriguez-R, Luis M 4 months ago
Date of priority
2024-05-29 02:02 PM (UTC)

Publications
1

Citation Title
Mies et al., 2024, mBio Genome reduction and horizontal gene transfer in the evolution of Endomicrobia—rise and fall of an intracellular symbiosis with termite gut flagellates
Effective publication



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