Ruminimicrobiellum caprinum

Citation

Formal styling

Ruminimicrobiellum caprinum Mies et al., 2024

Effective publication

Mies et al., 2024

SeqCode status

Valid (SeqCode)

Register List

seqco.de/r:tm1bm3q2 (validated)

Canonical URL

https://seqco.de/i:32935

Nomenclature

Rank

Species

Syllabication

ca.pri'num

Etymology

L. neut. adj. caprinum, of or belonging to goats, referring to the isolation source

Nomenclatural type

NCBI Assembly: GCA_017413305.1

Nomenclatural status

Validly published under the SeqCode

Taxonomy

Description

The species comprises only metagenome-assembled genomes. The species includes all bacteria with more than 95% average nucleotide identity (ANI) to the type genome. The GC content of the type genome is 33.0 mol% and the estimated genome size is 1.7 Mbp.

Classification

Bacteria » Elusimicrobiota » Endomicrobiia » Endomicrobiales » Endomicrobiaceae » Ruminimicrobiellum » Ruminimicrobiellum caprinum

Parent

Ruminimicrobiellum

Genomics

Accession

NCBI Assembly:GCA_017413305.1

Type

Metagenome-Assembled Genome (MAG)

Estimated Quality Metrics

• Completeness: 90.95%
• Contamination: 2.55%
• Quality: 78.2

Ribosomal and transfer RNA genes

• 0 16S rRNAs
• 0 23S rRNAs
• tRNAs for 18 amino acids

Sequencing depth

30.0 ×

Source

• BioSample: SAMN16341842
• BioSample: SAMN15829886

Other features

• G+C Content: 33.0%
• Coding Density: 91.55%
• Codon Table: 11
• N50: 5,768 bp
• Contigs: 342
• Largest Contig: 39,049 bp
• Assembly Length: 1,545,008 bp
• Ambiguous Assembly Fraction: 0.0%

Automated checks

Complete

See additional details

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Last modified about 1 month ago

Metadata

Outside links and data sources

• GTDB Genome: GCA_017413305.1
• Global Biodiversity Information Facility (GBIF)
• Wikispecies: Ruminimicrobiellum caprinum (see reference source)

Search sequences

• Seach in NCBI Nucleotide

Local history

• This name was last modified 7 months ago
• Submission process status
• Quality checks before valid publication

Registered by

Mies, Undine Sophie about 1 year ago

Submitted by

Mies, Undine Sophie 7 months ago

Curators

• Rodriguez-R, Luis M (genomics)
• Palmer, Marike (nomenclature)

Validated by

Rodriguez-R, Luis M 7 months ago

Date of priority

2024-05-29 02:02 PM (UTC)