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Costitxia debeseaTs

Citation

Formal styling
Costitxia debeseaTs Gago et al., 2024
Effective publication
Gago et al., 2024
SeqCode status
Valid (SeqCode)
Register List
seqco.de/r:4u3eoyk5 (validated)
Canonical URL
https://seqco.de/i:43911

Nomenclature

Rank
Species
Syllabication
de.be.se'a
Etymology
N.L. fem. adj. debesea, arbitrary name formed from the DBSE (Deep Blue Sea Enterprise)
Nomenclatural type
NCBI Assembly: GCA_963583855.1
Nomenclatural status
Validly published under the SeqCode

Taxonomy

Description
This species Costitxia debesea sp. nov. is the type to the new genus Costitxia gen. nov. This genus is also the type for the new family Costitxiaceae fam. nov., order Costitxiales ord. nov. and class Costitxiaia class. nov. Metabolic inference indicated that this organism is mainly aerobic since the complete electron transport chain could be detected, including cytochrome bd complex with high affinity to oxygen. The genetic repertoire also suggests that could be facultative anaerobe due to a putative capability to respire nitrate/nitrite or iron, and heterotrophic bacteria according to the central carbon metabolism. The MAG presents Cas-systems and lack the flagellar machinery required for motility. Genes could not be detected for oxidase, catalase and lysine decarboxylase. The MAG originates from groundwater on the island of Mallorca. The type material is strain T4.018, with a genome sequence available under ENA accession GCA_963583855.
Classification
Bacteria » Bacteroidota » Costitxiia » Costitxiales » Costitxiaceae » Costitxia » Costitxia debeseaTs
Parent
Costitxia

Genomics

Accession
NCBI Assembly:GCA_963583855.1
Type
Metagenome-Assembled Genome (MAG)
Estimated Quality Metrics
  • Completeness: 95.6%
  • Contamination: 2.19%
  • Quality: 84.65
Ribosomal and transfer RNA genes
  • 1 16S rRNA (up to 100.0%)
  • 1 23S rRNA (up to 100.0%)
  • tRNAs for 20 amino acids
Sequencing depth
20.0 ×
Source
Other features
  • G+C Content: 42.3%
  • Coding Density: 91.79%
  • Codon Table: 11
  • N50: 177,734 bp
  • Contigs: 65
  • Largest Contig: 454,615 bp
  • Assembly Length: 4,497,801 bp
  • Ambiguous Assembly Fraction: 0.0%
Submitter comments
CheckM was used to assess the completeness and contamination of the MAG.
Automated checks
Complete
See additional details
Last modified about 1 month ago

Metadata

Outside links and data sources
Search sequences
Local history
Registered by
Gago, Juan F. 11 months ago
Submitted by
Gago, Juan F. 10 months ago
Curators
Endorsed by
Palmer, Marike 10 months ago
Validated by
Palmer, Marike 8 months ago
Date of priority
2024-04-18 07:32 AM (UTC)

Publications
1

Citation Title
Gago et al., 2024, Systematic and Applied Microbiology Metagenomics of two aquifers with thermal anomalies in Mallorca Island, and proposal of new uncultivated taxa named following the rules of SeqCode
Effective publication


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