Lloretia debesea^Ts

Citation

Formal styling

Lloretia debesea^Ts Gago et al., 2024

Effective publication

Gago et al., 2024

SeqCode status

Valid (SeqCode)

Register List

seqco.de/r:4u3eoyk5 (validated)

Canonical URL

https://seqco.de/i:43916

Nomenclature

Rank

Species

Syllabication

de.be.se'a

Etymology

N.L. fem. adj. debesea, arbitrary name formed from the DBSE (Deep Blue Sea Enterprise)

Nomenclatural type

NCBI Assembly: GCA_963986085.1

Nomenclatural status

Validly published under the SeqCode

Taxonomy

Description

This species Lloretia debesea sp. nov. is the type to the new genus Lloretia gen. nov. This genus is also the type for the new family Lloretiaceae fam. nov. The MAG encodes for the complete set of complexes for the oxidative electron transport phosphorylation chain, suggesting an aerobic respiration. Despite aerobic respiration, the microorganism seems to be capable of dissimilatory nitrate reduction. Predicted central carbon metabolism indicated a heterotrophic-based lifestyle, encoding all the genes for glycolysis, non-oxidative pentose phosphate pathway, pyruvate oxidation and glycogen degradation, and also including the near-complete Krebs cycle. Genes could not be detected for oxidase, catalase and lysine decarboxylase, and also those involved in motility. The MAG originates from groundwater on the island of Mallorca. The type material is strain T5.010, with a genome sequence available under ENA accession GCA_963583845.

Classification

Bacteria » Elusimicrobiota » Elusimicrobia » Elusimicrobiales » Lloretiaceae » Lloretia » Lloretia debesea^Ts

Parent

Lloretia

Genomics

Accession

NCBI Assembly:GCA_963986085.1

Type

Metagenome-Assembled Genome (MAG)

Estimated Quality Metrics

• Completeness: 93.6%
• Contamination: 2.25%
• Quality: 82.35

Ribosomal and transfer RNA genes

• 1 16S rRNA (up to 100.0%)
• 1 23S rRNA (up to 100.0%)
• tRNAs for 19 amino acids

Sequencing depth

39.7 ×

Source

• BioSample: SAMEA114445986

Other features

• G+C Content: 64.1%
• Coding Density: 93.06%
• Codon Table: 11
• N50: 45,948 bp
• Contigs: 136
• Largest Contig: 183,324 bp
• Assembly Length: 2,991,132 bp
• Ambiguous Assembly Fraction: 0.0%

Submitter comments

CheckM was used to assess the completeness and contamination of the MAG.

Automated checks

Complete

See additional details

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Last modified about 1 month ago

Metadata

Outside links and data sources

• GTDB Genome: GCA_963986085.1
• Global Biodiversity Information Facility (GBIF)
• Wikispecies: Lloretia debesea (see reference source)

Search sequences

• Seach in NCBI Nucleotide

Local history

• This name was last modified 8 months ago
• Submission process status
• Quality checks before valid publication

Registered by

Gago, Juan F. 11 months ago

Submitted by

Gago, Juan F. 10 months ago

Curators

• Rodriguez-R, Luis M (genomics)
• Palmer, Marike (nomenclature)

Endorsed by

Palmer, Marike 10 months ago

Validated by

Palmer, Marike 8 months ago

Date of priority

2024-04-18 07:32 AM (UTC)