Villigracilis saccharophilus^Ts

Citation

Formal styling

Villigracilis saccharophilus^Ts Petriglieri et al., 2023 (valid 2024)

Effective publication

Petriglieri et al., 2023

SeqCode status

Valid (SeqCode)

Register List

seqco.de/r:82uy5hy3 (validated)

Canonical URL

https://seqco.de/i:43982

Nomenclature

Rank

Species

Syllabication

sac.cha.ro.phi'lus

Etymology

Gr. neut. n. saccharon, sugar; Gr. masc. n. philos, lover; N.L. masc. adj. saccharophilus, indicating a preference for sugars as carbon sources

Nomenclatural type

NCBI Assembly: GCA_016709305.1

Nomenclatural status

Validly published under the SeqCode

Taxonomy

Description

The species is established on the same basis as the genus and the type material is the genome EsbW_MAXAC.021. Fluorescence in situ hybridization with genus-specific FISH probes shows filamentous morphology (12-50 × 0.3-0.4 µm).

Classification

Bacteria » Chloroflexota » Anaerolineae » Anaerolineales » Villigracilaceae » Villigracilis » Villigracilis saccharophilus^Ts

Parent

Villigracilis gtdb assigned in Petriglieri et al., 2023

Genomics

Accession

NCBI Assembly:GCA_016709305.1

Type

Metagenome-Assembled Genome (MAG)

Estimated Quality Metrics

• Completeness: 96.36%
• Contamination: 2.55%
• Quality: 83.61

Ribosomal and transfer RNA genes

• 1 16S rRNA (up to 100.0%)
• 1 23S rRNA (up to 100.0%)
• tRNAs for 19 amino acids

Sequencing depth

12.0 ×

Source

• BioSample: SAMN16425897
• BioSample: SAMN14825690

Other features

• G+C Content: 49.87%
• Coding Density: 88.96%
• Codon Table: 11
• N50: 106,336 bp
• Contigs: 63
• Largest Contig: 499,611 bp
• Assembly Length: 4,851,661 bp
• Ambiguous Assembly Fraction: 0.0%

Automated checks

Complete

See additional details

Metadata

Outside links and data sources

• GTDB Genome: GCA_016709305.1
• GTDB Tree: s__Villigracilis saccharophilus
• Global Biodiversity Information Facility (GBIF)
• Wikispecies: Villigracilis saccharophilus (see reference source)

Search sequences

• Seach in NCBI Nucleotide

Local history

• This name was last modified 5 months ago
• Submission process status
• Quality checks before valid publication

Registered by

Petriglieri, Francesca 8 months ago

Submitted by

Petriglieri, Francesca 6 months ago

Curators

• Palmer, Marike (nomenclature)
• Valero Tebar, Juan
• Rodriguez-R, Luis M (genomics)

Validated by

Rodriguez-R, Luis M 5 months ago

Date of priority

2024-04-26 11:27 AM (UTC)